TCONS_00039434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039434
Unique NameTCONS_00039434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039434 ID=TCONS_00039434|Name=TCONS_00039434|organism=Clytia hemisphaerica|type=transcript|length=249bp
AATCAATTCAACGACTCTAGtGTTGAAGATGATTGCAGTCTGATTATCAG
TCAAAGCATTTACAGAAATGATGCCAACAATAACATTAACAACAGcaaAC
CTGTGGAGGAGTCACAAGAAACGGAATTTCAAACAACATGTGATTTACAG
CAGCTGTTTTCATCATTTCTTGACAAAGATGTTGGTTTCGCCTCGAATAC
AATCATTACAAACAATACAACTACAATCGATACAGTCAGCATTGAGAAA
Run BLAST on NCBI

transcript from alignment at sc0002106:19375..20497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039434 ID=TCONS_00039434|Name=TCONS_00039434|organism=Clytia hemisphaerica|type=transcript|length=1123bp|location=Sequence derived from alignment at sc0002106:19375..20497- (Clytia hemisphaerica)
AATCAATTCAACGACTCTAGGTATGTCAGATATGTTATATTGTCGGTTTC
TCCATTTAAAGTACATAAAATAAATTTTCCCAAATAAGTCCTTAAGCAAC
AATGCAGTATTTTGCACATGCCTGTTTTAATGGACCCTAAATTATTTCGA
AAATCATGCTAAAGAGTTTCTAAAAGATCTTATTCCTTATCCCATCAACC
TGGTGGAGACCAATTAAAGTGATTAGATTTTATTTTTTCTTTGTAGTGTT
GAAGATGATTGCAGTCTGATTATCAGTCAAAGCATTTACAGAAATGATGC
CAACAATAACATTAACAACAGGTATACTTCAAATCTATCCTTGAGAAACG
AAAAACTCTTTTTTTAATGTTATTCAAGCAGATTCAAGCATGTTACTACC
TTGGTCAGAAAACTGATTCTAAACTAATAATGGATATTTTGGTCAGAAAC
AATAAATTTATAACCAAGGTCAAATTGAGAAAGTTCTTTAAAAATTATTT
TTAGCAAACCTGTGGAGGAGTCACAAGAAACGGAATTTCAAACAACATGT
GATTTACAGCAGCTGTTTTCATCATTTCTTGACAAAGAGTATGTTTGCCT
TTTTGTCCGCTGTTTCTCAATGGCTCTTTTAAAGTTTTTCAATTTCTGAA
ATGATTGTATCAAATGTATGAATTTTTAAAACAGAATAAACTGATCACAT
GGGCTTCATTATTTTTTCTACGTAGTTTTGATTCTCCAATCATGCATCAT
GCTGGTAAAAGGGAAAAATTAGCTGGATCATTCTAACTTGTCATTGAACT
CCTTGTCGTCTCCTTTCCATGAGAAACAAAGTTTGTTTACACATAAAGAA
CTCTAAAAAGCATGTAAATGTTAAAACTAGTCAATATTGCCAAAATAATA
GTGATTTGAAAATAGTGAAGGTGAAACCTCTAATCTCCCATGCTATTTAT
AGAAAAATCTTTAAAGTAGGTCCCTTCTCCCTTGGGTGCAACATGTTATC
ATGAATGGGAGAAAATCGTCAATTTTTTTTATATTGGTTCTTCTTTCTTT
CAGTGTTGGTTTCGCCTCGAATACAATCATTACAAACAATACAACTACAA
TCGATACAGTCAGCATTGAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023794XLOC_023794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039434-exon-sc0002106-1575043694:20478..20497TCONS_00039434-exon-sc0002106-1575043694:20478..20497Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1575043694:20177..20251TCONS_00039434-exon-sc0002106-1575043694:20177..20251Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1575043694:19910..19993TCONS_00039434-exon-sc0002106-1575043694:19910..19993Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1575043694:19375..19444TCONS_00039434-exon-sc0002106-1575043694:19375..19444Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1510915933:20478..20497TCONS_00039434-exon-sc0002106-1510915933:20478..20497Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1510915933:20177..20251TCONS_00039434-exon-sc0002106-1510915933:20177..20251Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1510915933:19910..19993TCONS_00039434-exon-sc0002106-1510915933:19910..19993Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1510915933:19375..19444TCONS_00039434-exon-sc0002106-1510915933:19375..19444Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1491911889:20478..20497TCONS_00039434-exon-sc0002106-1491911889:20478..20497Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1491911889:20177..20251TCONS_00039434-exon-sc0002106-1491911889:20177..20251Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1491911889:19910..19993TCONS_00039434-exon-sc0002106-1491911889:19910..19993Clytia hemisphaericaexon
TCONS_00039434-exon-sc0002106-1491911889:19375..19444TCONS_00039434-exon-sc0002106-1491911889:19375..19444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002106supercontigsc0002106:19375..20497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.88185	0	4.20127	9.9597	10.0133	7.49946	1.96896	0.812957	2.36723	2.07483	0.517986	1.07587	0.884509	0	0	0	0.827931	0	0	0	0	0	1.67243	1.4926	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top