TCONS_00039433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039433
Unique NameTCONS_00039433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039433 ID=TCONS_00039433|Name=TCONS_00039433|organism=Clytia hemisphaerica|type=transcript|length=334bp
NNCTGTATGAAGCACTTGGTTTGTGTGAAACTGGCAAAGCTGGAGAATTG
ATCGATAACGCGAAATGGATTGAGAATAAACAAGGTGGTAAACTTTGTCA
ACTCGGTAACAAATGGGTGGTGAACACAGATGGTGGATTAGAATCTAAAG
GTCATCCAATTGGTGCTACTGGTATCGCACAATGCGCCGAAATTGTATAT
CAGCTTCGTGGTGAAGCTGGCAAGCGTCAAGTGGAAGGAGCTCAGATTGG
TTTGCAACATAATTTTGGAATCGGTGGTGCTGCAGTAGTCACTATGTACA
GAAGGATAGGCGTACGCCCGTCAAAACTTTAAGG
Run BLAST on NCBI

protein sequence of TCONS_00039433-protein

>TCONS_00039433-protein ID=TCONS_00039433-protein|Name=TCONS_00039433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
LYEALGLCETGKAGELIDNAKWIENKQGGKLCQLGNKWVVNTDGGLESKG
HPIGATGIAQCAEIVYQLRGEAGKRQVEGAQIGLQHNFGIGGAAVVTMYR
RIGVRPSKL
Run BLAST on NCBI

transcript from alignment at sc0002106:2..1135-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039433 ID=TCONS_00039433|Name=TCONS_00039433|organism=Clytia hemisphaerica|type=transcript|length=1134bp|location=Sequence derived from alignment at sc0002106:2..1135- (Clytia hemisphaerica)
NNCTGTATGAAGCACTTGGTTTGTGTGAAACTGGCAAAGCTGGAGAATTG
ATCGATAACGCGAAATGGATTGAGAATAAACAAGGTATAGCTATTTATTT
TGTATGACAACATGAACCAAGCTTTGATACTTGAATATTGTCCTTCATAA
TTATCTTTTATTTTCATAAAATCTCCGATTAACCTTCCAACTAGTTTGAA
AAATAATGAAGTTTAGCCAGCTTCAAGGAGATTGAGATTGATTTTCCTGG
TAATAAACTTGGCTAGGTACCATATGATCAAATATGGTTGAAGATTCACG
TAATCGTAATTGCTCCGGTTAATAAGCTAAGTTTCTTTTTTGAAATGCTT
TGCCTGGGGACAAGCGTTTCATGAAAATTACATCCTTGGTCTTTAAATAG
TTGGAGAAATGAAATGCTGCACGATTGTCGGTTTGCAAGTTCAATTAAAT
TTTAAGATGGGGGAAAGAAATCAGACGTTAAACAAAATGTTATGATATTT
TTCAGGTGGTAAACTTTGTCAACTCGGTAACAAATGGGTGGTGAACACAG
ATGGTGGATTAGAATCTAAAGGTCATCCAATTGGTGCTACTGGTATCGCA
CAATGCGCCGAAATTGTATATCAGGTTAAGATGTTATGAAACCTAATTCC
CTATATCCGTTATACAGTACGGTCTCCATAACTGTAAATAATTATTTATG
ATTATGTCTTACTAAATTCAAGAAAGAGATGTAATTTTAGGTTTTTTTAC
ATAAATACCTTATACATACATATCTTTTGAATATCAATCTAAAGGTTATC
AGGAGCCCATCTTAAGCATTTTTTCTAAATTTGTGTTGTCTCTTTATTAA
GGATGATAATGTGTAATACTGTGAGCAAATTTAAACCCTTCGAGTATCTT
CCTATTTTTTTACTAGGCGAAGCATCCTTGGGGGCGGGTCGAGGACTCCA
AGATGCTAGATTAGTTAAGGCTCTAATTCAATTTCAATTTCCTTGTATTT
TAGCTTCGTGGTGAAGCTGGCAAGCGTCAAGTGGAAGGAGCTCAGATTGG
TTTGCAACATAATTTTGGAATCGGTGGTGCTGCAGTAGTCACTATGTACA
GAAGGATAGGCGTACGCCCGTCAAAACTTTAAGG

Coding sequence (CDS) from alignment at sc0002106:2..1135-

>TCONS_00039433 ID=TCONS_00039433|Name=TCONS_00039433|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0002106:2..1135- (Clytia hemisphaerica)
CTTCGTGGTGAAGCTGGCAAGCGTCAAGTGGAAGGAGCTCAGATTGGTTT
GCAACATAATTTTGGAATCGGTGGTGCTGCAGTAGTCACTATGTACAGAA
GGATAGGCGTACGCCCGTCAAAACTTTAAGTGGTAAACTTTGTCAACTCG
GTAACAAATGGGTGGTGAACACAGATGGTGGATTAGAATCTAAAGGTCAT
CCAATTGGTGCTACTGGTATCGCACAATGCGCCGAAATTGTATATCAGCT
GTATGAAGCACTTGGTTTGTGTGAAACTGGCAAAGCTGGAGAATTGATCG
ATAACGCGAAATGGATTGAGAATAAACAAGCTTCGTGGTGAAGCTGGCAA
GCGTCAAGTGGAAGGAGCTCAGATTGGTTTGCAACATAATTTTGGAATCG
GTGGTGCTGCAGTAGTCACTATGTACAGAAGGATAGGCGTACGCCCGTCA
AAACTTTAAGTGGTAAACTTTGTCAACTCGGTAACAAATGGGTGGTGAAC
ACAGATGGTGGATTAGAATCTAAAGGTCATCCAATTGGTGCTACTGGTAT
CGCACAATGCGCCGAAATTGTATATCAGCTGTATGAAGCACTTGGTTTGT
GTGAAACTGGCAAAGCTGGAGAATTGATCGATAACGCGAAATGGATTGAG
AATAAACAAGCTTCGTGGTGAAGCTGGCAAGCGTCAAGTGGAAGGAGCTC
AGATTGGTTTGCAACATAATTTTGGAATCGGTGGTGCTGCAGTAGTCACT
ATGTACAGAAGGATAGGCGTACGCCCGTCAAAACTTTAAGTGGTAAACTT
TGTCAACTCGGTAACAAATGGGTGGTGAACACAGATGGTGGATTAGAATC
TAAAGGTCATCCAATTGGTGCTACTGGTATCGCACAATGCGCCGAAATTG
TATATCAGCTGTATGAAGCACTTGGTTTGTGTGAAACTGGCAAAGCTGGA
GAATTGATCGATAACGCGAAATGGATTGAGAATAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023793XLOC_023793Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039433-proteinTCONS_00039433-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039433-exon-sc0002106-1575043694:1052..1135TCONS_00039433-exon-sc0002106-1575043694:1052..1135Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1575043694:512..630TCONS_00039433-exon-sc0002106-1575043694:512..630Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1575043694:2..132TCONS_00039433-exon-sc0002106-1575043694:2..132Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1510915933:1052..1135TCONS_00039433-exon-sc0002106-1510915933:1052..1135Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1510915933:512..630TCONS_00039433-exon-sc0002106-1510915933:512..630Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1510915933:2..132TCONS_00039433-exon-sc0002106-1510915933:2..132Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1491911889:1052..1135TCONS_00039433-exon-sc0002106-1491911889:1052..1135Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1491911889:512..630TCONS_00039433-exon-sc0002106-1491911889:512..630Clytia hemisphaericaexon
TCONS_00039433-exon-sc0002106-1491911889:2..132TCONS_00039433-exon-sc0002106-1491911889:2..132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002106supercontigsc0002106:2..1135 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.0562	57.4087	84.9229	90.401	23.6042	16.2979	22.2408	26.194	18.9116	24.4476	22.1621	16.9766	16.8698	20.3586	21.8134	28.3627	32.6199	40.556	22.527	24.6759	20.195	25.569	23.8322	21.4803	13.6339	14.8071	20.9295	18.6429	24.7476	16.1901
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020617Thiolase_C
IPR016039Thiolase-like
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Blast
[Close]
BLAST of TCONS_00039433 vs. Swiss-Prot (Human)
Match: NLTP (Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.436e-33
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 3 
Query:    6 YEALGLCETGKAGELIDNAKWIENKQGGKLCQLGNKWVVNTDGGLESKGHPIGATGIAQCAEIVYQLRGEAGKRQVEGAQIGLQHNFGIGGAAVVTMYR 302
            YEALGLC  G+   L+D     +N  GGK       WV+N  GGL SKGHP+GATG+AQCAE+ +QLRGEAGKRQV GA++ LQHN GIGGA VVT+Y+
Sbjct:  316 YEALGLCPEGQGATLVDRG---DNTYGGK-------WVINPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYK 404
The following BLAST results are available for this feature:
BLAST of TCONS_00039433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NLTP7.436e-3360.61Non-specific lipid-transfer protein OS=Homo sapien... [more]
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