TCONS_00039430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039430
Unique NameTCONS_00039430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039430 ID=TCONS_00039430|Name=TCONS_00039430|organism=Clytia hemisphaerica|type=transcript|length=3992bp
TCCCTATactttattacttcaaataaaccTTCGAATTGCTCCTTTAGGGA
AGGGCGTTTATTCAAGGGGgcatttattcgaagtaatacggtaaattact
ctgtaccagagtgcaTCTCACGTTTATCACTTCGTAgttcactctgtgcg
cattgtatGCTTGCATAAAAAAAATCCTGTACGGAgacctctctcaccaa
cactccattgCAGCGGTCGGTTGGAAAATCTCagatgagaaaagacaatg
acaacagactcTCTAcgtacggcaatgaattttgaaattacccGTAGATA
TGGATATGTGTACAGACAAGGGGTAAATAGGCTTATtctgaaaaattact
tttactCTATTGTTGTAAGCATAGGTACAATATGAATGGGTTTTACCGAA
TCCAGACTAGACAATAAAGCTAAAAGCTATTGCTCGTAACCACCAACAAA
CTCTTTTAGCTTTTCTCACGTATCGGTCAAGAAGTTTTTTCCACAATTTG
TAAACCCCAAAAAAGTAAGTTATTTTTATCCTATGAAAATCATGGGAATC
TTATATAAAAGAGGTTTAATTCCAATTGAATCTTCAAGACACATTAATGA
AAAGATGTCTAAGATGCGTTTTTCTTATTCTTTCTTAGAATGAGTACCCG
AGTATCATCCGGAGAATCAACTGTTGCATCAACATTAAAGGACCAAGTTG
AGAATCCGTTGGTTGCTAACGACAGACCAAAGGACCGAAGTGAGGATCCA
ACGTCTGAAAGCCCACGCAAGAGACCGAATAATGACAGCGTTGAGAATCG
TGTTCCATCGAAGGCCAGGAAAGTTGGACGTTTTGATCTTACCTCAAAAG
ACAATGAAAATTCTCTGGAGATTAAATCTGATCTGACAGGNTGAGAATCG
TGTTCCATCGAAGGCCAGGAAAGTTGGACGTTTTGATCTTACCTCAAAAG
ACAATGAAAATTCTCTGGAGATCAAATCTGATCTGACAGAATATGCTATA
AAGCAGATGGATACTTATATTACCGATACAGATATTAAAGAAGAGATAAA
ATTTACTCATCCTGTCCCAGATAGACCCGATAGAATTTTTTCACCCAGTA
TGGGTAAGAATAATAGAATGACACTCGATGGGGATTTATATTCCCATATT
TCTTATGGGGTTTTATGGcgggggatttcaattctttcgttttcaagtca
gaaaattcagtggtgaTATGAAgattagcataatattttgcagtgaggat
tgtttttttttaattattttcagtagGAACTAAAAcgggaggataatttt
ccatcgAGTAcgatattttagccaattttccagtgggaagggttcccagt
gggtctgtgagaagtgggTATATTTAAACAATATAAGGGATAATATGGAC
TCGAATATGCAGAGgagggggtcggtactaaaatttcagacatcatgact
tttagtgacgtggtggtattacaaaaaaggccttaaagcattttagtacc
atgtgtactaaaatcccaaattaggtggggtcttcaagaaatttaagaaa
aattttaatacaCGAGTACTAAAAGTCaacaaattttaggaaatttaact
attgaccaagcattttaggcaaaatgaagaaaataaaaactttctatATA
AGATtcaaacacccctgtgtcacaaattaagcaaaaattttatcaccggt
gagaaaatacccttgaatttcagccccactgggaaattgactttgatttc
acccccactcgaaattccatgttaaaaaaattggactccaaaactttccc
cactgggttttttaaccttggaacaatagaatttctatcccattagcatt
tcaataggaatttttatcctcactgaAGAAAAAGGTTCCAACGGGGCTGT
GAAACCTGGTGAAACAGGCGTGTATTTAATGTTCTGCTTTTATACTGTTT
ATATACTATggaatgaaaaatgttttcgaagttaaatgctttgtttttgt
aaagaaccatggataactggatagaaaagaaatagcaagctgtaaattag
aggtgaaaaataaccaatcaatcttTGCAATAACTAAAGTAGAGCAGAGC
AAAAGTGTCTCGACTGTTTCTGAGTCTTTAGAAGAAGAGATGtgtacctt
tttcaaaaattaggtggtcaaaaatggtcaaaaaaccttttagtactcat
atatgtcttggattttagtaccgaccccccccctggaaTATGAATTCTCT
CATTAGACAAAGCCTTCACGTCACTTCAAGAAAAGATTTCAAACGTGCTT
GGTCCACTCTCCCGAGTTTGGGAATTTCTTGAAAGCCAAAAGGATCAGGT
CATTGAACAAACCTCACAGATGGAGGAGAAAGATTTGAGTGAGCAAGTAC
TGAGCATATAAAACATCAAAGGACTGTTCACACCTGATGGACATGACGGT
GACACTATTGGGTCAAGCTTTCAATGCACTGTGGGTGTACTATCACACAA
CACGAAGCTACTTAGTGGAGAGGATCCCAATGACAAAAGGATTAACAACA
CCGGCAGACCACCTCTTCTAAACAAACGAGATTATCGCGTAGTTAGACGA
TAGATAAAAATCCTGCGCGATTTTGAGGGCATTATCACTTCAAAGCGATT
GCAGCCATCGTTACCAACAACCTAGGCAACGGCCTCAAACCAAACAGGCG
TCATTTGAGGCACATTGGTTGCGAATATCAAAGTACACGAAGAAAGGGAA
TACTAAAGCAGAAGGATCTTAAGACTTGGCTGAAATTTgcgaaacatttg
aaaaagctCGGACTTGGTTTAGAATTTCGGAAGAAAGAAATAAGCTTCTT
TTTAGATGCAGTTGGTTTTATTTATATGAAAAATCCCTTGGACCAGGCCA
GGACAACAAGTGTCTGAGAGTGGAGACGAACGGATGAGGGCCTAACTTAC
GGTTGTACCGCAAAGGGTAAGAAGGAAGGCTCAAAGCAAGTTAAACTTAT
GGTGGCTATCTCTTACCAGCAGGGTGTTATACTATGCGAACAATATGAAG
ATCAATTATGCGTCAGGGGTTTTGCATCAATGGTACGTAGAAAGTTTCCA
CTTGCCTTCACATTATCAATTAACCCAAAGTCCAAAAGAGTGCTGCAAGA
TGGTGTTGTGTAATCTAAGGCTTCCTCTTTATATTCTAAAGTTATAAGAT
ATTTTACGTACACGTGACTAGCACTGTACACTATATTTTAGTCTAGAAGA
TAACTACCGGGTGTGACACAAATAAGTTACCTTCTTTGATTTGATACTGt
aggcagtagaaaagagatttttcaattttcaatcattttggaatcattca
gaggaaagcctaacttaaaatgtggtgtattactttttaattttactata
ttggttcaaaagttgtgttcaaaaacctaaaatgtcaatttaaaagaaaa
tgtcaaaaaaggctGAGGCTTTTTCGTTCATTCTCGCTTTAAAGACCAGA
CGTTATAAGGAActtaaaatgacaattttgtcAATTCATGTTTCCCATTT
CATCAAGCAGCATCAAGAGATATTTTGTTTGCTTAAAGCTCGAATGAATT
TGAGTTgatgaatttgaattttagaaattttaagaacatagtATTTCGAT
CAAATTAATAATGATAAAAAGTACAGTAAATAGAATTAATAATGGTCTTT
GTTTCATTCGGCTATGATTTTAGTTAAGCATGAGTGAGCGGATCCCAGTA
TTAGATCGTTGACTCCGATTTTTCATAAAATCGGGATTGCACTTCGGGCC
CTCGCACAATCCTCAAGTTCTTTTcatgtttcaagatggcggacagTTGT
AGCGAAAGTGATAGAGTAAGTACATTGTTTAGATTCGTGTTTCTTATGCT
TATAGTTTTCTTGTACATATCGAGAGTGATGAAAAGTTGTTAATAAGATG
CAAAAGATTATCTTCGTGTTATTTTTAAAGAGATATAATAAT
Run BLAST on NCBI

transcript from alignment at sc0002103:24631..28622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039430 ID=TCONS_00039430|Name=TCONS_00039430|organism=Clytia hemisphaerica|type=transcript|length=3992bp|location=Sequence derived from alignment at sc0002103:24631..28622- (Clytia hemisphaerica)
TCCCTATACTTTATTACTTCAAATAAACCTTCGAATTGCTCCTTTAGGGA
AGGGCGTTTATTCAAGGGGGCATTTATTCGAAGTAATACGGTAAATTACT
CTGTACCAGAGTGCATCTCACGTTTATCACTTCGTAGTTCACTCTGTGCG
CATTGTATGCTTGCATAAAAAAAATCCTGTACGGAGACCTCTCTCACCAA
CACTCCATTGCAGCGGTCGGTTGGAAAATCTCAGATGAGAAAAGACAATG
ACAACAGACTCTCTACGTACGGCAATGAATTTTGAAATTACCCGTAGATA
TGGATATGTGTACAGACAAGGGGTAAATAGGCTTATTCTGAAAAATTACT
TTTACTCTATTGTTGTAAGCATAGGTACAATATGAATGGGTTTTACCGAA
TCCAGACTAGACAATAAAGCTAAAAGCTATTGCTCGTAACCACCAACAAA
CTCTTTTAGCTTTTCTCACGTATCGGTCAAGAAGTTTTTTCCACAATTTG
TAAACCCCAAAAAAGTAAGTTATTTTTATCCTATGAAAATCATGGGAATC
TTATATAAAAGAGGTTTAATTCCAATTGAATCTTCAAGACACATTAATGA
AAAGATGTCTAAGATGCGTTTTTCTTATTCTTTCTTAGAATGAGTACCCG
AGTATCATCCGGAGAATCAACTGTTGCATCAACATTAAAGGACCAAGTTG
AGAATCCGTTGGTTGCTAACGACAGACCAAAGGACCGAAGTGAGGATCCA
ACGTCTGAAAGCCCACGCAAGAGACCGAATAATGACAGCGTTGAGAATCG
TGTTCCATCGAAGGCCAGGAAAGTTGGACGTTTTGATCTTACCTCAAAAG
ACAATGAAAATTCTCTGGAGATTAAATCTGATCTGACAGGNTGAGAATCG
TGTTCCATCGAAGGCCAGGAAAGTTGGACGTTTTGATCTTACCTCAAAAG
ACAATGAAAATTCTCTGGAGATCAAATCTGATCTGACAGAATATGCTATA
AAGCAGATGGATACTTATATTACCGATACAGATATTAAAGAAGAGATAAA
ATTTACTCATCCTGTCCCAGATAGACCCGATAGAATTTTTTCACCCAGTA
TGGGTAAGAATAATAGAATGACACTCGATGGGGATTTATATTCCCATATT
TCTTATGGGGTTTTATGGCGGGGGATTTCAATTCTTTCGTTTTCAAGTCA
GAAAATTCAGTGGTGATATGAAGATTAGCATAATATTTTGCAGTGAGGAT
TGTTTTTTTTTAATTATTTTCAGTAGGAACTAAAACGGGAGGATAATTTT
CCATCGAGTACGATATTTTAGCCAATTTTCCAGTGGGAAGGGTTCCCAGT
GGGTCTGTGAGAAGTGGGTATATTTAAACAATATAAGGGATAATATGGAC
TCGAATATGCAGAGGAGGGGGTCGGTACTAAAATTTCAGACATCATGACT
TTTAGTGACGTGGTGGTATTACAAAAAAGGCCTTAAAGCATTTTAGTACC
ATGTGTACTAAAATCCCAAATTAGGTGGGGTCTTCAAGAAATTTAAGAAA
AATTTTAATACACGAGTACTAAAAGTCAACAAATTTTAGGAAATTTAACT
ATTGACCAAGCATTTTAGGCAAAATGAAGAAAATAAAAACTTTCTATATA
AGATTCAAACACCCCTGTGTCACAAATTAAGCAAAAATTTTATCACCGGT
GAGAAAATACCCTTGAATTTCAGCCCCACTGGGAAATTGACTTTGATTTC
ACCCCCACTCGAAATTCCATGTTAAAAAAATTGGACTCCAAAACTTTCCC
CACTGGGTTTTTTAACCTTGGAACAATAGAATTTCTATCCCATTAGCATT
TCAATAGGAATTTTTATCCTCACTGAAGAAAAAGGTTCCAACGGGGCTGT
GAAACCTGGTGAAACAGGCGTGTATTTAATGTTCTGCTTTTATACTGTTT
ATATACTATGGAATGAAAAATGTTTTCGAAGTTAAATGCTTTGTTTTTGT
AAAGAACCATGGATAACTGGATAGAAAAGAAATAGCAAGCTGTAAATTAG
AGGTGAAAAATAACCAATCAATCTTTGCAATAACTAAAGTAGAGCAGAGC
AAAAGTGTCTCGACTGTTTCTGAGTCTTTAGAAGAAGAGATGTGTACCTT
TTTCAAAAATTAGGTGGTCAAAAATGGTCAAAAAACCTTTTAGTACTCAT
ATATGTCTTGGATTTTAGTACCGACCCCCCCCCTGGAATATGAATTCTCT
CATTAGACAAAGCCTTCACGTCACTTCAAGAAAAGATTTCAAACGTGCTT
GGTCCACTCTCCCGAGTTTGGGAATTTCTTGAAAGCCAAAAGGATCAGGT
CATTGAACAAACCTCACAGATGGAGGAGAAAGATTTGAGTGAGCAAGTAC
TGAGCATATAAAACATCAAAGGACTGTTCACACCTGATGGACATGACGGT
GACACTATTGGGTCAAGCTTTCAATGCACTGTGGGTGTACTATCACACAA
CACGAAGCTACTTAGTGGAGAGGATCCCAATGACAAAAGGATTAACAACA
CCGGCAGACCACCTCTTCTAAACAAACGAGATTATCGCGTAGTTAGACGA
TAGATAAAAATCCTGCGCGATTTTGAGGGCATTATCACTTCAAAGCGATT
GCAGCCATCGTTACCAACAACCTAGGCAACGGCCTCAAACCAAACAGGCG
TCATTTGAGGCACATTGGTTGCGAATATCAAAGTACACGAAGAAAGGGAA
TACTAAAGCAGAAGGATCTTAAGACTTGGCTGAAATTTGCGAAACATTTG
AAAAAGCTCGGACTTGGTTTAGAATTTCGGAAGAAAGAAATAAGCTTCTT
TTTAGATGCAGTTGGTTTTATTTATATGAAAAATCCCTTGGACCAGGCCA
GGACAACAAGTGTCTGAGAGTGGAGACGAACGGATGAGGGCCTAACTTAC
GGTTGTACCGCAAAGGGTAAGAAGGAAGGCTCAAAGCAAGTTAAACTTAT
GGTGGCTATCTCTTACCAGCAGGGTGTTATACTATGCGAACAATATGAAG
ATCAATTATGCGTCAGGGGTTTTGCATCAATGGTACGTAGAAAGTTTCCA
CTTGCCTTCACATTATCAATTAACCCAAAGTCCAAAAGAGTGCTGCAAGA
TGGTGTTGTGTAATCTAAGGCTTCCTCTTTATATTCTAAAGTTATAAGAT
ATTTTACGTACACGTGACTAGCACTGTACACTATATTTTAGTCTAGAAGA
TAACTACCGGGTGTGACACAAATAAGTTACCTTCTTTGATTTGATACTGT
AGGCAGTAGAAAAGAGATTTTTCAATTTTCAATCATTTTGGAATCATTCA
GAGGAAAGCCTAACTTAAAATGTGGTGTATTACTTTTTAATTTTACTATA
TTGGTTCAAAAGTTGTGTTCAAAAACCTAAAATGTCAATTTAAAAGAAAA
TGTCAAAAAAGGCTGAGGCTTTTTCGTTCATTCTCGCTTTAAAGACCAGA
CGTTATAAGGAACTTAAAATGACAATTTTGTCAATTCATGTTTCCCATTT
CATCAAGCAGCATCAAGAGATATTTTGTTTGCTTAAAGCTCGAATGAATT
TGAGTTGATGAATTTGAATTTTAGAAATTTTAAGAACATAGTATTTCGAT
CAAATTAATAATGATAAAAAGTACAGTAAATAGAATTAATAATGGTCTTT
GTTTCATTCGGCTATGATTTTAGTTAAGCATGAGTGAGCGGATCCCAGTA
TTAGATCGTTGACTCCGATTTTTCATAAAATCGGGATTGCACTTCGGGCC
CTCGCACAATCCTCAAGTTCTTTTCATGTTTCAAGATGGCGGACAGTTGT
AGCGAAAGTGATAGAGTAAGTACATTGTTTAGATTCGTGTTTCTTATGCT
TATAGTTTTCTTGTACATATCGAGAGTGATGAAAAGTTGTTAATAAGATG
CAAAAGATTATCTTCGTGTTATTTTTAAAGAGATATAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023790XLOC_023790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039430-exon-sc0002103-1575043694:24631..28622TCONS_00039430-exon-sc0002103-1575043694:24631..28622Clytia hemisphaericaexon
TCONS_00039430-exon-sc0002103-1510915933:24631..28622TCONS_00039430-exon-sc0002103-1510915933:24631..28622Clytia hemisphaericaexon
TCONS_00039430-exon-sc0002103-1491911889:24631..28622TCONS_00039430-exon-sc0002103-1491911889:24631..28622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002103supercontigsc0002103:24631..28622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0868883	0	0	0.219552	0.403781	0.25892	0.525959	0.467849	0.282895	0	0	0.00301387	0	0	0.355185	0.250336	0.103857	0.198719	0	0.110236	0.450486	0	0	0.175041	0	0.10687	0.135886	0	0.091118	0.292336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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