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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039417 ID=TCONS_00039417|Name=TCONS_00039417|organism=Clytia hemisphaerica|type=transcript|length=972bp
GTTTTATGCTGTGCCTTGATGGTAGGAACGCCATTTGGTATTGAACTATT
GAAGAGAGATCACATAGTGCTACGCTGATTTTCTAAAAGcaaTGATCCTT
CAATGTATATTCCTTCTCTTGGCTTTGGTCAACACATCAAATGGGCTATT
TTGGAGCTTTAATCAATTTGCATATTGTCCACGAACTCCAAGCTTCTGCA
GCTATCACGGTGCCTCGTATTTCTTCATGGATTGTAATGCTGATGGGATC
AAAGATAATGTATGTCTTGATAATTGGGGTCGTTTCTCAATGATTATTCG
GTTTACTTCATTTGAATgcatgaaaaaagattttagttCCTGTAATCTTG
GTAATAATAAGATGTCATGCAAGAGGCCAAGTTATTGGTGTACGCACAAT
TCAGCAACGTTTTTATTTCAAGATTGTGATGGGGATGGAATTCCAGATCC
GGTCTGTTCTGACAAGTGGGGAAGCATGGGGATCATTAGCAGCTCGAATG
GCTGCAAGAATACTTGGCCACAGGCTAAGTGTAAAACAGCCAAAGGGAAT
GCTTGTAAGAGACCCTCTGGTTTTTGTAGTTACTGGGGTGTCACTTATGA
TTTGTTTGATTGTGATGGTGATGGTATCCCAGACCCGATTTGTACCGATC
ATCAAGGCGTACTCAGCATCATTTCCAGTAAAAATGGTTGCAAACCCATC
CGGACCCCAAACGGAAAATGTCAAACGAAGAAGGGTTTAGCCTGTCCACG
ACCGAAAAATTTCTGCAACCAAGCAAGTTCATCAAAGTTCATGTATCTAG
ATTGCGACGGTGATGGAATTCCTGATCCTGTTTGTAGCATGGCTAGATCT
CCCAAGCCTTGGGATTGCGTTAAAAGTTCTGATAATTGTAAAATAGTACA
TCTCCATCGCAGCCATCGGTTCGtttaaaaattgtttcattttcaaaaca
aagttaaaacgcatgcgtaGAT Run BLAST on NCBI protein sequence of TCONS_00039417-protein >TCONS_00039417-protein ID=TCONS_00039417-protein|Name=TCONS_00039417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MILQCIFLLLALVNTSNGLFWSFNQFAYCPRTPSFCSYHGASYFFMDCNA
DGIKDNVCLDNWGRFSMIIRFTSFECMKKDFSSCNLGNNKMSCKRPSYWC
THNSATFLFQDCDGDGIPDPVCSDKWGSMGIISSSNGCKNTWPQAKCKTA
KGNACKRPSGFCSYWGVTYDLFDCDGDGIPDPICTDHQGVLSIISSKNGC
KPIRTPNGKCQTKKGLACPRPKNFCNQASSSKFMYLDCDGDGIPDPVCSM
ARSPKPWDCVKSSDNCKIVHLHRSHRFV Run BLAST on NCBI transcript from alignment at sc0002100:18752..20254+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039417 ID=TCONS_00039417|Name=TCONS_00039417|organism=Clytia hemisphaerica|type=transcript|length=1503bp|location=Sequence derived from alignment at sc0002100:18752..20254+ (Clytia hemisphaerica)
GTTTTATGCTGTGCCTTGATGGTAGGAACGCCATTTGGTATTGAACTATT
GAAGAGAGATCACATAGTGCTACGCTGATTTTCTAAAAGGTTAGATTTTT
AGATTaattaataaatttattttagacGAAATATTGTTANTTGAAGAGAG
ATCACATAGTGCTACGCTGATTTTCTAAAAGGTTAGATTTTTAGATTaat
taataaatttattttagacGAAATATTGTTAGGCTATCCTCCCAGATTAT
ATTTCTGTCGAAGGGAAAGTTTATGAGTTATATTTTTATGCGTGAGTTTC
ACTATGTTCGTCTCCCATTTTTACAGTGTGTCCCAATAAAGTGGACAAAT
ATTTAtctaaagtaaaatcctcaatttctgcgaaatttaatgaaatttaa
tgaCTAGACTAGTATACTTAATATCTCAATCTCAAAAAACTATTCAATAA
TCATTCTAGGATTCGAATTtctattgattgaacagagaattttaatctta
tttcaattattctaagGCCCAGTTTAGGTGATGAGTTTCGAGGatgtttt
ttattcttttagatTCTTTATATTAAAATTTGTCCGACACCTTGTACAAC
ctactaaattttcattttagcaaTGATCCTTCAATGTATATTCCTTCTCT
TGGCTTTGGTCAACACATCAAATGGGCTATTTTGGAGCTTTAATCAATTT
GCATATTGTCCACGAACTCCAAGCTTCTGCAGCTATCACGGTGCCTCGTA
TTTCTTCATGGATTGTAATGCTGATGGGATCAAAGATAATGTATGTCTTG
ATAATTGGGGTCGTTTCTCAATGATTATTCGGTTTACTTCATTTGAATgc
atgaaaaaagattttagttCCTGTAATCTTGGTAATAATAAGATGTCATG
CAAGAGGCCAAGTTATTGGTGTACGCACAATTCAGCAACGTTTTTATTTC
AAGATTGTGATGGGGATGGAATTCCAGATCCGGTCTGTTCTGACAAGTGG
GGAAGCATGGGGATCATTAGCAGCTCGAATGGCTGCAAGAATACTTGGCC
ACAGGCTAAGTGTAAAACAGCCAAAGGGAATGCTTGTAAGAGACCCTCTG
GTTTTTGTAGTTACTGGGGTGTCACTTATGATTTGTTTGATTGTGATGGT
GATGGTATCCCAGACCCGATTTGTACCGATCATCAAGGCGTACTCAGCAT
CATTTCCAGTAAAAATGGTTGCAAACCCATCCGGACCCCAAACGGAAAAT
GTCAAACGAAGAAGGGTTTAGCCTGTCCACGACCGAAAAATTTCTGCAAC
CAAGCAAGTTCATCAAAGTTCATGTATCTAGATTGCGACGGTGATGGAAT
TCCTGATCCTGTTTGTAGCATGGCTAGATCTCCCAAGCCTTGGGATTGCG
TTAAAAGTTCTGATAATTGTAAAATAGTACATCTCCATCGCAGCCATCGG
TTCGtttaaaaattgtttcattttcaaaacaaagttaaaacgcatgcgta
GAT Coding sequence (CDS) from alignment at sc0002100:18752..20254+ >TCONS_00039417 ID=TCONS_00039417|Name=TCONS_00039417|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at sc0002100:18752..20254+ (Clytia hemisphaerica)
aTGATCCTTCAATGTATATTCCTTCTCTTGGCTTTGGTCAACACATCAAA
TGGGCTATTTTGGAGCTTTAATCAATTTGCATATTGTCCACGAACTCCAA
GCTTCTGCAGCTATCACGGTGCCTCGTATTTCTTCATGGATTGTAATGCT
GATGGGATCAAAGATAATGTATGTCTTGATAATTGGGGTCGTTTCTCAAT
GATTATTCGGTTTACTTCATTTGAATgcatgaaaaaagattttagttCCT
GTAATCTTGGTAATAATAAGATGTCATGCAAGAGGCCAAGTTATTGGTGT
ACGCACAATTCAGCAACGTTTTTATTTCAAGATTGTGATGGGGATGGAAT
TCCAGATCCGGTCTGTTCTGACAAGTGGGGAAGCATGGGGATCATTAGCA
GCTCGAATGGCTGCAAGAATACTTGGCCACAGGCTAAGTGTAAAACAGCC
AAAGGGAATGCTTGTAAGAGACCCTCTGGTTTTTGTAGTTACTGGGGTGT
CACTTATGATTTGTTTGATTGTGATGGTGATGGTATCCCAGACCCGATTT
GTACCGATCATCAAGGCGTACTCAGCATCATTTCCAGTAAAAATGGTTGC
AAACCCATCCGGACCCCAAACGGAAAATGTCAAACGAAGAAGGGTTTAGC
CTGTCCACGACCGAAAAATTTCTGCAACCAAGCAAGTTCATCAAAGTTCA
TGTATCTAGATTGCGACGGTGATGGAATTCCTGATCCTGTTTGTAGCATG
GCTAGATCTCCCAAGCCTTGGGATTGCGTTAAAAGTTCTGATAATTGTAA
AATAGTACATCTCCATCGCAGCCATCGGTTCGtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039417-exon-sc0002100-1491911889:18752..18840 | TCONS_00039417-exon-sc0002100-1491911889:18752..18840 | Clytia hemisphaerica | exon |
| TCONS_00039417-exon-sc0002100-1510915933:18752..18840 | TCONS_00039417-exon-sc0002100-1510915933:18752..18840 | Clytia hemisphaerica | exon |
| TCONS_00039417-exon-sc0002100-1575043694:18752..18840 | TCONS_00039417-exon-sc0002100-1575043694:18752..18840 | Clytia hemisphaerica | exon |
| TCONS_00039417-exon-sc0002100-1491911889:19372..20254 | TCONS_00039417-exon-sc0002100-1491911889:19372..20254 | Clytia hemisphaerica | exon |
| TCONS_00039417-exon-sc0002100-1510915933:19372..20254 | TCONS_00039417-exon-sc0002100-1510915933:19372..20254 | Clytia hemisphaerica | exon |
| TCONS_00039417-exon-sc0002100-1575043694:19372..20254 | TCONS_00039417-exon-sc0002100-1575043694:19372..20254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002100 | supercontig | sc0002100:18752..20254 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028974 | TSP_type-3_rpt |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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