TCONS_00039416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039416
Unique NameTCONS_00039416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039416 ID=TCONS_00039416|Name=TCONS_00039416|organism=Clytia hemisphaerica|type=transcript|length=237bp
CATCATGAGAATttcgtgaaaagtaataatatagATTGGGCCATATTTAA
GAAACGCGTTTAAGCGCGGTCAAAACGCGGGTCAAACAGAAAGTGAGTCG
CTCTTGtctctcctaaataagggaGTTTGAGAAAAAACGCATTTTGAAGG
TCGAGGGTGTTTCttcattattaaaaatttacgtcaacacatgcaaatga
ggctatttatggtttttagaagtttgaaaaagaatga
Run BLAST on NCBI

transcript from alignment at sc0002099:1041..1277

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039416 ID=TCONS_00039416|Name=TCONS_00039416|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at sc0002099:1041..1277 (Clytia hemisphaerica)
tcattctttttcaaacttctaaaaaccataaatagcctcatttgcatgtg
ttgacgtaaatttttaataatgaaGAAACACCCTCGACCTTCAAAATGCG
TTTTTTCTCAAACtcccttatttaggagagaCAAGAGCGACTCACTTTCT
GTTTGACCCGCGTTTTGACCGCGCTTAAACGCGTTTCTTAAATATGGCCC
AATctatattattacttttcacgaaATTCTCATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023779XLOC_023779Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039416-exon-sc0002099-1491911889:1041..1277TCONS_00039416-exon-sc0002099-1491911889:1041..1277Clytia hemisphaericaexon
TCONS_00039416-exon-sc0002099-1510915933:1041..1277TCONS_00039416-exon-sc0002099-1510915933:1041..1277Clytia hemisphaericaexon
TCONS_00039416-exon-sc0002099-1575043694:1041..1277TCONS_00039416-exon-sc0002099-1575043694:1041..1277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002099supercontigsc0002099:1041..1277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.71973	0.920496	8.55027	7.31947	1.27296	6.03548	1.21359	5.68075	5.56811	5.91172	0.956344	9.42994	3.76673	12.3873	6.96805	4.60171	4.2517	5.08416	1.00344	2.10005	5.47596	1.33549	0	0.983977	5.06736	3.618	3.88301	1.38135	4.19082	3.20234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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