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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039410 ID=TCONS_00039410|Name=TCONS_00039410|organism=Clytia hemisphaerica|type=transcript|length=1343bp
ggctgattgtggctgattgtggctgattgtggctgattgtggctggttgt
ggctgattgtggctggttgtggctggttgtggctggttgtggctggttgt
ggctgattgtggctgattgtggctggttgtggctggttgcgtATTTtaga
tttcttgaaaaaaaacaaaatttcaattttctccgTCAAATACtgagcat
tgccattttgcatctttgtggaAAAAATCATCCAATCCCGATAATAGCTT
GTAACAAACGGAAAAACGAAAGAAAGGGCGGACGGACATAGTTAAATTCA
TTAAACCTCAAGGTAGGCCCAAAAATTAATCATCAGAGTCAGTCAAATCC
GTCAAATCCGTCAAATCCCATTCTTCCATCATTTTCTTCAGAGTCTCTTT
CTTATAACGAATTTGATCAGGTGTCCTCTGGAGCAAAACTCTTCGTAAAA
TTTCACTGATGATCCAACTAATTGTACGTTTCTCATAATTCTCTCGATCA
CATTCAAGCTCTGGACTGTTATCCAAAATCATATCACCAAACTCATTTTT
ACCATAATCATTAGGTAACCGTTTATCCCTTCTATAATAATATGGAAAAT
TACCATAAACTAAACAGCCATCAGCAAAAAATGACGGTATTTTATCTTTA
CGTAACCCTTCTGCGACACTTTCCCATATTATACATGCAATCTCTAACGG
CGATGCATTCTCAAGATCTGCGTTATTCTCAATTTCTTTGAACAGGGCAG
TCTTTAAGTAATAGGATGGATATTCGGGTTTTGGCAACTCATTTTCATCG
GGAAATTTGAGCCACGATGTCGAAAAATCTGGCAGCCATTCTCTAACAGC
CTTTGCCAATGTGTATCCTGATATGTAGTTTGGAGGGCAAGTATTAAAGA
TCTTGGTTTCGATTTTAAAGAAAGATATCCGAAATAAATCAGATTCTGAA
TATGGTTCGTCATCAAACATTTCAAGTTCTTCAAGTTCCTCCTTAGCTCG
TTTGACAACAATGAGACAACCCTCTTTCAATGCTTCTCGTATGATTGGAC
TTTTGAAGTTGGTACGAACACATCCCGGTAACCGATCTTTAACTACCAAA
GCAACAACCATATCAATTGATATCGAAAGAAATTTATACCGAGGTCCTAT
CCACAAAAGTGTCAAAGAATCAATTGATTTAGGGTTAGCACGATCGAGAC
CTTTTTCTAGGTAGAATCCAAGACCATCCCAAATCTTGTTGTCAGAAATA
ATCATATTGATAAATGTGTAGAAAAATTCTGTTATCTTTGTACTTCTAAG
GTTGCCTTGTTTGTCAAAGTATACTTCGTACTCTTTTTTAATA Run BLAST on NCBI protein sequence of TCONS_00039410-protein >TCONS_00039410-protein ID=TCONS_00039410-protein|Name=TCONS_00039410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
IKKEYEVYFDKQGNLRSTKITEFFYTFINMIISDNKIWDGLGFYLEKGLD
RANPKSIDSLTLLWIGPRYKFLSISIDMVVALVVKDRLPGCVRTNFKSPI
IREALKEGCLIVVKRAKEELEELEMFDDEPYSESDLFRISFFKIETKIFN
TCPPNYISGYTLAKAVREWLPDFSTSWLKFPDENELPKPEYPSYYLKTAL
FKEIENNADLENASPLEIACIIWESVAEGLRKDKIPSFFADGCLVYGNFP
YYYRRDKRLPNDYGKNEFGDMILDNSPELECDRENYEKRTISWIISEILR
RVLLQRTPDQIRYKKETLKKMMEEWDLTDLTDLTDSDD Run BLAST on NCBI transcript from alignment at sc0002098:2..1344 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039410 ID=TCONS_00039410|Name=TCONS_00039410|organism=Clytia hemisphaerica|type=transcript|length=1343bp|location=Sequence derived from alignment at sc0002098:2..1344 (Clytia hemisphaerica)
TATTAAAAAAGAGTACGAAGTATACTTTGACAAACAAGGCAACCTTAGAA
GTACAAAGATAACAGAATTTTTCTACACATTTATCAATATGATTATTTCT
GACAACAAGATTTGGGATGGTCTTGGATTCTACCTAGAAAAAGGTCTCGA
TCGTGCTAACCCTAAATCAATTGATTCTTTGACACTTTTGTGGATAGGAC
CTCGGTATAAATTTCTTTCGATATCAATTGATATGGTTGTTGCTTTGGTA
GTTAAAGATCGGTTACCGGGATGTGTTCGTACCAACTTCAAAAGTCCAAT
CATACGAGAAGCATTGAAAGAGGGTTGTCTCATTGTTGTCAAACGAGCTA
AGGAGGAACTTGAAGAACTTGAAATGTTTGATGACGAACCATATTCAGAA
TCTGATTTATTTCGGATATCTTTCTTTAAAATCGAAACCAAGATCTTTAA
TACTTGCCCTCCAAACTACATATCAGGATACACATTGGCAAAGGCTGTTA
GAGAATGGCTGCCAGATTTTTCGACATCGTGGCTCAAATTTCCCGATGAA
AATGAGTTGCCAAAACCCGAATATCCATCCTATTACTTAAAGACTGCCCT
GTTCAAAGAAATTGAGAATAACGCAGATCTTGAGAATGCATCGCCGTTAG
AGATTGCATGTATAATATGGGAAAGTGTCGCAGAAGGGTTACGTAAAGAT
AAAATACCGTCATTTTTTGCTGATGGCTGTTTAGTTTATGGTAATTTTCC
ATATTATTATAGAAGGGATAAACGGTTACCTAATGATTATGGTAAAAATG
AGTTTGGTGATATGATTTTGGATAACAGTCCAGAGCTTGAATGTGATCGA
GAGAATTATGAGAAACGTACAATTAGTTGGATCATCAGTGAAATTTTACG
AAGAGTTTTGCTCCAGAGGACACCTGATCAAATTCGTTATAAGAAAGAGA
CTCTGAAGAAAATGATGGAAGAATGGGATTTGACGGATTTGACGGATTTG
ACTGACTCTGATGATTAATTTTTGGGCCTACCTTGAGGTTTAATGAATTT
AACTATGTCCGTCCGCCCTTTCTTTCGTTTTTCCGTTTGTTACAAGCTAT
TATCGGGATTGGATGATTTTTtccacaaagatgcaaaatggcaatgctca
GTATTTGAcggagaaaattgaaattttgttttttttcaagaaatctaAAA
Tacgcaaccagccacaaccagccacaatcagccacaatcagccacaacca
gccacaaccagccacaaccagccacaaccagccacaatcagccacaacca
gccacaatcagccacaatcagccacaatcagccacaatcagcc Coding sequence (CDS) from alignment at sc0002098:2..1344 >TCONS_00039410 ID=TCONS_00039410|Name=TCONS_00039410|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0002098:2..1344 (Clytia hemisphaerica)
ATTAAAAAAGAGTACGAAGTATACTTTGACAAACAAGGCAACCTTAGAAG
TACAAAGATAACAGAATTTTTCTACACATTTATCAATATGATTATTTCTG
ACAACAAGATTTGGGATGGTCTTGGATTCTACCTAGAAAAAGGTCTCGAT
CGTGCTAACCCTAAATCAATTGATTCTTTGACACTTTTGTGGATAGGACC
TCGGTATAAATTTCTTTCGATATCAATTGATATGGTTGTTGCTTTGGTAG
TTAAAGATCGGTTACCGGGATGTGTTCGTACCAACTTCAAAAGTCCAATC
ATACGAGAAGCATTGAAAGAGGGTTGTCTCATTGTTGTCAAACGAGCTAA
GGAGGAACTTGAAGAACTTGAAATGTTTGATGACGAACCATATTCAGAAT
CTGATTTATTTCGGATATCTTTCTTTAAAATCGAAACCAAGATCTTTAAT
ACTTGCCCTCCAAACTACATATCAGGATACACATTGGCAAAGGCTGTTAG
AGAATGGCTGCCAGATTTTTCGACATCGTGGCTCAAATTTCCCGATGAAA
ATGAGTTGCCAAAACCCGAATATCCATCCTATTACTTAAAGACTGCCCTG
TTCAAAGAAATTGAGAATAACGCAGATCTTGAGAATGCATCGCCGTTAGA
GATTGCATGTATAATATGGGAAAGTGTCGCAGAAGGGTTACGTAAAGATA
AAATACCGTCATTTTTTGCTGATGGCTGTTTAGTTTATGGTAATTTTCCA
TATTATTATAGAAGGGATAAACGGTTACCTAATGATTATGGTAAAAATGA
GTTTGGTGATATGATTTTGGATAACAGTCCAGAGCTTGAATGTGATCGAG
AGAATTATGAGAAACGTACAATTAGTTGGATCATCAGTGAAATTTTACGA
AGAGTTTTGCTCCAGAGGACACCTGATCAAATTCGTTATAAGAAAGAGAC
TCTGAAGAAAATGATGGAAGAATGGGATTTGACGGATTTGACGGATTTGA
CTGACTCTGATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039410-exon-sc0002098-1491911889:2..1344 | TCONS_00039410-exon-sc0002098-1491911889:2..1344 | Clytia hemisphaerica | exon |
| TCONS_00039410-exon-sc0002098-1510915933:2..1344 | TCONS_00039410-exon-sc0002098-1510915933:2..1344 | Clytia hemisphaerica | exon |
| TCONS_00039410-exon-sc0002098-1575043694:2..1344 | TCONS_00039410-exon-sc0002098-1575043694:2..1344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002098 | supercontig | sc0002098:2..1344 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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