TCONS_00039409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039409
Unique NameTCONS_00039409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039409 ID=TCONS_00039409|Name=TCONS_00039409|organism=Clytia hemisphaerica|type=transcript|length=1753bp
GTAGAAAAGCTCTCTTAACTGGCCAATAGAAACCCATCCAATATTTACTT
TAGACATCATTTATTTTACTCTTGCAAGTCTGAGTAATGATATTAAATTT
AAACATATTTTTCCATCATTCTTTGACAGATCAActtcaaaaacttaaaa
tatcTCATTTTGGACGAAGCTGACAGAATGTTGGACATGGGATTTGGTCA
AGCTTTACAAAACATTATCAACACATCAGAAATGCCTCCGAAAGGTCTTC
GTTCAACACTCATGTTCAGTGCAACATTCCCTAAAGAGATCCAACAGATG
GCAGCTAACCTGATGAATGACTACCTTTTCTTAACTGTCGGTCGTGTTGG
CGGTGCGTGTGCTGATATCCAACAGACTATCATGCAAGTTGCAGGATCCG
AAAAGCGTTCCACGTTAGAAAAGTTGTTGCAAGACTCAGGAAGTGATCGT
ACTTTGGTATTCGTCGAACGGAAGAAAGATGCCGACTTTTTGGCGAGTTT
CTTGTCGCAGAGAAACTACCCAACCACAAGTTTGAATGGTGATCGAAGTC
AACAAGAACGAGAGATGGCGCTGGAGGACTTCAGGAGAGGAAAAGCTCCT
GTTTTGGTCGCTACTGCTGTCGCCGCTAGAGGTTTGGATGTGAAAGACGT
GAAACATGTGATCAATTACGACCTTCCATCCGACCCAACTGAGTACGTCC
ATCGTATCGGCCGAACCGGTCGTATCGGAAACAAAGGAAAGGCTACTTCT
TTCTTCGACGTAAATCGTGATGGAAActtagcacgaccactagtcaAATA
TCTGTCTGAGGCCGAACAAGAAGTACCAGATTGGTTCGAGGATTTTGCTT
TGCGGGCGGTCGGTACAGGTTACGGAACTGATCAGTCACAATTCCGCGAC
CAACGTTCTAAGTTCTTGCGAAACGGAGGCGGTGGTGGTATGGGCGGAGT
GCCAACTCAAGGGAAAGTTGTGTCATTGGCTAACACAGCAGATGACGATG
ATGAAGAATGGTGAAAGGGCAGAATGAGAATTCTAGAAGAGCTCTATCTG
TACTCCCCCTTCCATCATTGGGTCGGTATCGATTGGTCGTTGACATTTCT
TTAAAACCAAGACCCTgttgaaaatacaaaatgagGTTTGGGTTTTTTGG
GGAACCAAcaattggaagaaaaaaaataacttcaCTTAAATTGTTGCATT
TTACTTGCTATGGTAATGTATATCGAGATATGAATCTAACGCTGACTTGA
AATTTGTTCAACATTTTATACTATTTGGCTGTTTTTAgggtttaatattt
ttttgaagataattAGTAGGTCAGCTAATCAGGCTTAGTACTTTTGGATA
CTTAAAAAGGCCTCCCTCTTGCTGCTACTAAATGTTCTTTAATGTTTTTA
CATCTTGCCTTGATTCTTATGTCTGTAAATTCAAGACATTATTATGtaaa
cccccctcccccccctccCATCTATAATGTTCCAACCCACCCGCCTTGTT
CCTTCTCCCTGTCTTTTAGACGTATTAAGTGTCCCTTCCCTAGATAACAA
CTGGCAGTCGAAAGAAAACCCATCCATACTTTCACACTTTTActtatttt
cttacatttttgtatctttttatAACTAGAGTagggtatttttcattttc
aagatgtttttattttacttttttgctttttgtatatatttttgtgtttt
tatgtaaaaaaagaaagaggagCTTTATTTGAACTTTGTCAAAACTGAAA
CAG
Run BLAST on NCBI

transcript from alignment at sc0002098:26505..30409-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039409 ID=TCONS_00039409|Name=TCONS_00039409|organism=Clytia hemisphaerica|type=transcript|length=3905bp|location=Sequence derived from alignment at sc0002098:26505..30409- (Clytia hemisphaerica)
GTAGAAAAGCTCTCTTAACTGGCCAATAGAAACCCATCCAATATTTACTT
TAGACATCATTTATTTTACTCTTGCAAGTCTGAGTAATGATATTAAATTT
AAACATATTTTTCCATCATTCTTTGACAGATCAACTTCAAAAACTTAAAA
TATCTCATTTTGGACGAAGCTGACAGGTAATTCTTTATACTTTGACTTTC
GTTTTATTATTGAAAAGGGTGGGAGTAAAATATGAATATTTAATTNTTAT
CGCAATTTTAAAATTTTGAGTTTTACGCGATTTTAGCTTAGTTTTATGTC
ATGTTTCACAATAAAGTCATAAAACCTGACCTAGAGGACCTACGACCCTA
AAAATTTGCACAAGTGCTCTTAATAAGATTTTATTAAAAGTCAGAAAGTT
TCAAGTCGTTTCAAAAAATTTCCACCAAGATATACATAAAAGAACACCAG
CGTGGTAGATCTACCAAGGGGGGGGGCTTGGGGCTAATCGGGTTAAGTTG
ACCAAAGTAATTATCCATCTTTTCTCTCATTTTAGGCCTCATTTTTGTTA
CCAGTGATCACCAATTTGCTCAACGATGGAGTCACCAACCAAATGTCTTT
GGAAGGTGCAGTGTTTCCTCTTGCACTAGTTATCGTTCCCACTCGTGAAC
TGGCTGTACAAATCTTCAGAGAGTCGATCAAATTTGCTTACGACAGTCCC
GTCAGAACGCAAGTGATTTATGGAGGTGTCTCGGTAAATCACCAAACAGA
TGCTTTGAGACGTGGTTGTCATATTCTGGTTGCCACACCAGGTCGATTGG
AAGATTTCATCCAAAGAGGAAAAGTGAGTATTTTCCGTAAATATGTAGAA
AAGCTCTCTTAACTGGCCAATAGAAACCCATCCAATATTTACTTTAGACA
TCATTTACTTTACTCTTGCAAGACTGAGTAATGATATTAAATTTAAACAT
ATTTTTCCATCATTCTTTGACAGATCAACTTCAAAAACTTAAAATATCTC
ATTTTGGACGAAGCTGACAGGTAATTCTTTATACTTTGACTTTCGTTTTG
TTATTGAAAAGGGTTGGAGAAAAATATGAATATTTAATCTAGCTAAGTAG
AATGGTAATTCATAGTGAAGCTTGAAGCAAATCTGGTCAGCTTTCTTGCT
TTCATGTATGTATTCTTTGCTTCAGAATGTTGGACATGGGATTTGGTCAA
GCTTTACAAAACATTATCAACACATCAGAAATGCCTCCGAAAGGTCTTCG
TTCAACACTCATGTTCAGTGCAACATTCCCTAAAGAGATCCAACAGATGG
CAGCTAACCTGATGAATGACTACCTTTTCTTAACTGTCGGTCGTGTTGGC
GGTGCGTGTGCTGATATCCAACAGACTATCATGCAAGTTGCAGGATCCGA
AAAGCGTTCCACGTTAGAAAAGTTGTTGCAAGACTCAGGTAATGTTTCTA
TATATGTTAAAGATGTGTGGAAACACGCCCATTCAATAAATGTGACTTTT
TATCATGTTTACAAAAACTCGACGTCAATCTTACAGGATCTTACTTNGGT
AATGTTTCTATATATGTTAAAGATGTGTGGAAACACGCCCATTCAATAAA
CATGACTTTTTATCATGTTTACAAAAACTCGACGTCAGTTTTACAGGATC
TTACTTAATATTCTAATAAGGTGTCTAATGGTATCACCGGGATCTCTTGA
TTTCAGGAAGTGATCGTACTTTGGTATTCGTCGAACGGAAGAAAGATGCC
GACTTTTTGGCGAGTTTCTTGTCGCAGAGAAACTACCCAACCACAAGTTT
GAATGGGTAAGTAGGCTCCGTCACAAGTTCTTAACCGTTCAACATAGCTG
ATGACCGTTCACAAACCAATAAAGCTCTTAGTTTTTTTCTAAAAAAACAT
AAAAAAGTTAAAAATTCAGTAGCTTTTCTTTCTCTGGCACAAGATATTTT
TTCTCTTATGCAATGTTTTGTTCTGACCTCGTTTGCTCTCCTTTTTGCAG
TGATCGAAGTCAACAAGAACGAGAGATGGCGCTGGAGGACTTCAGGAGAG
GAAAAGCTCCTGTTTTGGTCGCTACTGCTGTCGCCGCTAGAGGTTCGTAC
TTTATTTTACTGCTGTTCGTTGATTATATAATATATAGTTGTAAACTTAG
TTAGTAACTTGAATCGTTTTCTTTACTCAAACTAGTATGTTTGAGTTATA
ATATTTTAGGGAAATCTGAAAATGTTATTAAAATCTTTTCNAACTTGAAT
CGTTTTCTTTACTCAAACTAGTAGTATGTTTGTGTTATAATATTTTAGGG
AAATCTGAAAATGTTATTGAAATCTTTTTATACTTTGTCAAAATTTATAT
TTTGTCAGGTTTTTTTACAATTCGATTGGGTTAGGTACCGTCTTAATCTC
GTCATCTACAATTCCCCTGATATCTGGATAGGTTTGGATGTGAAAGACGT
GAAACATGTGATCAATTACGACCTTCCATCCGACCCAACTGAGTACGTCC
ATCGTATCGGCCGAACCGGTCGTATCGGAAACAAAGGAAAGGCTACTTCT
TTCTTCGACGTAAATCGTGATGGAAACTTAGCACGACCACTAGTCAAATA
TCTGTCTGAGGTTTGTAGTCTCCTGTTATAGCTCTTTTGTTTATAGACTT
CGTTTCCCCCTTTTTTAGTGCTAATGAAAATTGGCTCTTTCGTACTTGCT
CACCAACTTATTTTGTTGCCATTGTCCGAGGCCTACCTCTAGTAGCTTGA
AGATCTGCTGATCTGTTTTTTATTTCAAATTAAATCTGATAGCTTGTAAA
AATTTTGCTCATTGATATCTTTTAATTTGAGATCGACAACCTTTCTCTAC
AACATAAAGACTTAAAGACGAAAATTAAGTCCCTCGTTTAGCCTGATTTT
AGAATTTTTCAAGGTATACTTAAACTCAGTTTTTAATTTTAACGTAATAC
TTTACTCTATAGGCCGAACAAGAAGTACCAGATTGGTTCGAGGATTTTGC
TTTGCGGGCGGTCGGTACAGGTTACGGAACTGATCAGTCACAATTCCGCG
ACCAACGTTCTAAGTTCTTGCGAAACGGAGGCGGTGGTGGTATGGGCGGA
GTGCCAACTCAAGGGAAAGTTGTGTCATTGGCTAACACAGCAGATGACGA
TGATGAAGAATGGTGAAAGGGCAGAATGAGAATTCTAGAAGAGCTCTATC
TGTACTCCCCCTTCCATCATTGGGTCGGTATCGATTGGTCGTTGACATTT
CTTTAAAACCAAGACCCTGTTGAAAATACAAAATGAGGTTTGGGTTTTTT
GGGGAACCAACAATTGGAAGAAAAAAAATAACTTCACTTAAATTGTTGCA
TTTTACTTGCTATGGTAATGTATATCGAGATATGAATCTAACGCTGACTT
GAAATTTGTTCAACATTTTATACTATTTGGCTGTTTTTAGGGTTTAATAT
TTTTTTGAAGATAATTAGTAGGTCAGCTAATCAGGCTTAGTACTTTTGGA
TACTTAAAAAGGCCTCCCTCTTGCTGCTACTAAATGTTCTTTAATGTTTT
TACATCTTGCCTTGATTCTTATGTCTGTAAATTCAAGACATTATTATGTA
AACCCCCCTCCCCCCCCTCCCATCTATAATGTTCCAACCCACCCGCCTTG
TTCCTTCTCCCTGTCTTTTAGACGTATTAAGTGTCCCTTCCCTAGATAAC
AACTGGCAGTCGAAAGAAAACCCATCCATACTTTCACACTTTTACTTATT
TTCTTACATTTTTGTATCTTTTTATAACTAGAGTAGGGTATTTTTCATTT
TCAAGATGTTTTTATTTTACTTTTTTGCTTTTTGTATATATTTTTGTGTT
TTTATGTAAAAAAAGAAAGAGGAGCTTTATTTGAACTTTGTCAAAACTGA
AACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023774XLOC_023774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039409-exon-sc0002098-1575043694:30234..30409TCONS_00039409-exon-sc0002098-1575043694:30234..30409Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1575043694:28972..29234TCONS_00039409-exon-sc0002098-1575043694:28972..29234Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1575043694:28604..28703TCONS_00039409-exon-sc0002098-1575043694:28604..28703Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1575043694:28318..28409TCONS_00039409-exon-sc0002098-1575043694:28318..28409Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1575043694:27800..27978TCONS_00039409-exon-sc0002098-1575043694:27800..27978Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1575043694:26505..27447TCONS_00039409-exon-sc0002098-1575043694:26505..27447Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1510915933:30234..30409TCONS_00039409-exon-sc0002098-1510915933:30234..30409Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1510915933:28972..29234TCONS_00039409-exon-sc0002098-1510915933:28972..29234Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1510915933:28604..28703TCONS_00039409-exon-sc0002098-1510915933:28604..28703Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1510915933:28318..28409TCONS_00039409-exon-sc0002098-1510915933:28318..28409Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1510915933:27800..27978TCONS_00039409-exon-sc0002098-1510915933:27800..27978Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1510915933:26505..27447TCONS_00039409-exon-sc0002098-1510915933:26505..27447Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1491911889:30234..30409TCONS_00039409-exon-sc0002098-1491911889:30234..30409Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1491911889:28972..29234TCONS_00039409-exon-sc0002098-1491911889:28972..29234Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1491911889:28604..28703TCONS_00039409-exon-sc0002098-1491911889:28604..28703Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1491911889:28318..28409TCONS_00039409-exon-sc0002098-1491911889:28318..28409Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1491911889:27800..27978TCONS_00039409-exon-sc0002098-1491911889:27800..27978Clytia hemisphaericaexon
TCONS_00039409-exon-sc0002098-1491911889:26505..27447TCONS_00039409-exon-sc0002098-1491911889:26505..27447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002098supercontigsc0002098:26505..30409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.327426	0	0	0	0	0	0	0	0.476219	0	0	0	0	0	0.122078	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00039409 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 2.456e-95
Identity = 148/250 (59.20%), Postives = 192/250 (76.80%), Query Frame = 1 
Query:  127 QINFKNLKYLILDEADRMLDMGFGQALQNIINTSEMPPKGLRSTLMFSATFPKEIQQMAAN-LMNDYLFLTVGRVGGACADIQQTIMQVAGSEKRSTLEKLLQDSGSDRTLVFVERKKDADFLASFLSQRNYPTTSLNGDRSQQEREMALEDFRRGKAPVLVATAVAARGLDVKDVKHVINYDLPSDPTEYVHRIGRTGRIGNKGKATSFFDVNRDGNLARPLVKYLSEAEQEVPDWFEDFALRAVGTGY 873
            +I  K +KYL+LDEADRMLDMGFG  ++ +I+   MP K  R TLMFSATFP+EIQ++AA  L ++YLF+ VG+VGGAC D+QQT++QV    KR  L ++L++ G +RT+VFVE KK ADF+A+FL Q    TTS++GDR Q+ERE AL DFR GK PVLVAT+VAARGLD+++V+HVIN+DLPS   EYVHRIGRTGR GN G+A SFFD+  D +LA+PLVK L++A+Q+VP W E+ A      G+
Sbjct:  434 KIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGF 683
The following BLAST results are available for this feature:
BLAST of TCONS_00039409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX42.456e-9559.20Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
back to top