TCONS_00039405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039405
Unique NameTCONS_00039405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039405 ID=TCONS_00039405|Name=TCONS_00039405|organism=Clytia hemisphaerica|type=transcript|length=382bp
atttcccaccggggacgatattttggacaatttttccggtgggaagggtt
cccagtggggctgtgagaagggggtgtaggaAAGGGTTGAAATAATAAAC
TAGATGAAGTGTAGGAcaattctattttgaaaatatctaGCAAGTTACTA
GAAAATATACAAAATTATGTATCAAAATAAATTGGGGACAAAAACAAAGT
GACCAGAAGTGACATTGTCTTGAAGCCAAAACCTTAAATGTATTGTATCC
ATTGATTAAAAGTTTGCAATTTTCCATGAACAAAAACAATGATTTGTCGT
TTTTCCATTATCAGGCACTAACAGATAAAATCGTCAGCTCCTCCTAAGAA
TCCAGTAAGTGGTCGATTTTGCTTGTTTATGC
Run BLAST on NCBI

transcript from alignment at sc0002097:28326..28707

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039405 ID=TCONS_00039405|Name=TCONS_00039405|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0002097:28326..28707 (Clytia hemisphaerica)
GCATAAACAAGCAAAATCGACCACTTACTGGATTCTTAGGAGGAGCTGAC
GATTTTATCTGTTAGTGCCTGATAATGGAAAAACGACAAATCATTGTTTT
TGTTCATGGAAAATTGCAAACTTTTAATCAATGGATACAATACATTTAAG
GTTTTGGCTTCAAGACAATGTCACTTCTGGTCACTTTGTTTTTGTCCCCA
ATTTATTTTGATACATAATTTTGTATATTTTCTAGTAACTTGCtagatat
tttcaaaatagaattgTCCTACACTTCATCTAGTTTATTATTTCAACCCT
Ttcctacacccccttctcacagccccactgggaacccttcccaccggaaa
aattgtccaaaatatcgtccccggtgggaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023771XLOC_023771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039405-exon-sc0002097-1491911889:28326..28707TCONS_00039405-exon-sc0002097-1491911889:28326..28707Clytia hemisphaericaexon
TCONS_00039405-exon-sc0002097-1510915933:28326..28707TCONS_00039405-exon-sc0002097-1510915933:28326..28707Clytia hemisphaericaexon
TCONS_00039405-exon-sc0002097-1575043694:28326..28707TCONS_00039405-exon-sc0002097-1575043694:28326..28707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002097supercontigsc0002097:28326..28707 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.820295	0.599937	0.46439	0.227166	1.10621	1.52975	2.10924	1.97464	0.691247	0.642165	0.623301	1.2292	0.272776	0	1.51382	0.499864	1.84738	0.788959	0.435996	1.1406	2.27412	2.95485	2.58647	1.06885	0.220179	0.196504	3.47756	1.86617	1.17034	4.13967
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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