TCONS_00039395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039395
Unique NameTCONS_00039395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039395 ID=TCONS_00039395|Name=TCONS_00039395|organism=Clytia hemisphaerica|type=transcript|length=523bp
cacatggcatgggttgacccgggcaaaggtttgttcacttgccaagtgaa
ccgttgtgagtgggaatcgaaccttggtcgcctatacaggaatcaaggtt
gatgccCACTATACCACATCGCCTCTTCAGTAAAGTCGTTAATCATCCCC
CATTTAGACTATTGTTCCCAGCTTTGGAACCCACAGGAAAAGAGCCTGAT
CCAAGGAATTGAGGCTGTTCAAAGATCATTTACACAGCAAATCACAGATC
AAAGCATTGAGCTACTGGGAAAGACGAAGGAGTTTTGAATGTATTCTTTT
CAATGAAGGAGGGAAAGATATAATTATCATCTATACTTGGCGCATCCTAA
AGGCTTAGTTTCAAATATTGCAATTGATTATGAAACAGAGAATAAAGGCA
TCTTCAGCTTTCAAGACAAGGGACAAAGATGTCGTGTTAACCCTTTGGAA
GTCACTTGCCATTCCACACCTTGACTACTGCTCTCAAATCTATGGTCTCC
ATCAAAGAGATGTCTCATTCAAG
Run BLAST on NCBI

transcript from alignment at sc0002093:14705..15227

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039395 ID=TCONS_00039395|Name=TCONS_00039395|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0002093:14705..15227 (Clytia hemisphaerica)
CTTGAATGAGACATCTCTTTGATGGAGACCATAGATTTGAGAGCAGTAGT
CAAGGTGTGGAATGGCAAGTGACTTCCAAAGGGTTAACACGACATCTTTG
TCCCTTGTCTTGAAAGCTGAAGATGCCTTTATTCTCTGTTTCATAATCAA
TTGCAATATTTGAAACTAAGCCTTTAGGATGCGCCAAGTATAGATGATAA
TTATATCTTTCCCTCCTTCATTGAAAAGAATACATTCAAAACTCCTTCGT
CTTTCCCAGTAGCTCAATGCTTTGATCTGTGATTTGCTGTGTAAATGATC
TTTGAACAGCCTCAATTCCTTGGATCAGGCTCTTTTCCTGTGGGTTCCAA
AGCTGGGAACAATAGTCTAAATGGGGGATGATTAACGACTTTACTGAAGA
GGCGATGTGGTATAGTGggcatcaaccttgattcctgtataggcgaccaa
ggttcgattcccactcacaacggttcacttggcaagtgaacaaacctttg
cccgggtcaacccatgccatgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023761XLOC_023761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039395-exon-sc0002093-1491911889:14705..15227TCONS_00039395-exon-sc0002093-1491911889:14705..15227Clytia hemisphaericaexon
TCONS_00039395-exon-sc0002093-1510915933:14705..15227TCONS_00039395-exon-sc0002093-1510915933:14705..15227Clytia hemisphaericaexon
TCONS_00039395-exon-sc0002093-1575043694:14705..15227TCONS_00039395-exon-sc0002093-1575043694:14705..15227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002093supercontigsc0002093:14705..15227 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.860678	0.392624	1.05565	2.11885	1.16454	1.23139	1.51704	1.57259	0.207697	0.673078	0	0.250536	0.663138	0.234113	0.483036	0.649206	0.0918905	0.201233	0.390399	0.520687	0.640875	0.576413	0.689044	0.639004	1.28174	1.39967	1.69656	1.21503	0.81996	0.617284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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