TCONS_00039391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039391
Unique NameTCONS_00039391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039391 ID=TCONS_00039391|Name=TCONS_00039391|organism=Clytia hemisphaerica|type=transcript|length=1197bp
CTTAAATCTGCTTTTTGTAAAGGATCAATCGAAGGTTTTAGTATCATTCA
TCACAAAATCAAGCATCTGTTTATAAAATTTAGGACAAAAAGTGGTACCC
CAATAAGCCTAATTGGGGCCCGAATTGGGGTGCCCTACTTTTTACGAACA
CCCCATTATGTTTTTTAATATCATTATTAAATTTTTCTCCTCGTTCTTCC
GTCAGTGAATTTTAATCATTGATTTATTTTATTTTATTTCTATCAAAGTT
AAATACAAAGAAATAAATCATGAATTTGTTGTTTTAAATGGGTCTTGTGA
TGTTGAAATGCCAAGAGCAGAAAATACTTCTGCAACATCAATCAACTCCA
AAAACACTTCAGTGAGTGCCAGTGCTGTTCATCCTACTAAATTACAGGCT
AGTGAAGAGAAATCCAGTCTACAAAATGGACGTGCAGTTGATCATTTATT
CACAACCACCAATCGCTGTAAAGCATCTCTCTTCATTAATACAGGAGAAA
ATCGAACTATCCATGTGGTACATTATGCCCAACGAAAGCAAGACTTGTAC
ACACAATCAACATTCTCCAAAACAGAGGATGAAAGTTATGAATCTAAAGT
TACGTTATTTTTTATTCATGGAGTTGGTGGAACTATTCAAATGTGGGAAC
CCCAGATACATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTGGAT
TTGCTGGGACATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCA
ATTCACAGAGCTGGCCTCTGATGTAATGTTTATTTTTGATAGATTTAGTA
AACGTAGGAACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACA
ATGTTATCGAAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTC
TGGTGGAGGACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTT
TACCATTACCTTTCTTTGTTTGTATAAGAAAAAGTGTGGTCAAGATGTTT
CAAAGGATGGCATTTCATGAAGAAACAAGTGATACTGTTCGTCAAAAGAT
TTCAACTTTTGAGATTTCATCTTTCGCTCTTAAAGCCATCATGCAAGGAC
AGAATTGGCACGAGTCAACAGAAGAATATCATGCTAGTTTGAATCTACCT
GTACTGTTGGTTTATGGGAAAGGTGATCAGTTTGTTACTCTGGGTGG
Run BLAST on NCBI

protein sequence of TCONS_00039391-protein

>TCONS_00039391-protein ID=TCONS_00039391-protein|Name=TCONS_00039391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MPRAENTSATSINSKNTSVSASAVHPTKLQASEEKSSLQNGRAVDHLFTT
TNRCKASLFINTGENRTIHVVHYAQRKQDLYTQSTFSKTEDESYESKVTL
FFIHGVGGTIQMWEPQIHYFLTLGYEIIALDLLGHGQSGKPRVYNAYQFT
ELASDVMFIFDRFSKRRNVLIGHSYGSSFCTMLSKERARKVCKTVLISGG
GPTLLMPDRCSAFCLPLPFFVCIRKSVVKMFQRMAFHEETSDTVRQKIST
FEISSFALKAIMQGQNWHESTEEYHASLNLPVLLVYGKGDQFVTLG
Run BLAST on NCBI

transcript from alignment at sc0002093:16877..19198+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039391 ID=TCONS_00039391|Name=TCONS_00039391|organism=Clytia hemisphaerica|type=transcript|length=2322bp|location=Sequence derived from alignment at sc0002093:16877..19198+ (Clytia hemisphaerica)
CTTAAATCTGCTTTTTGTAAAGGATCAATCGAAGGTTTTAGTATCATTCA
TCACAAAATCAAGCATCTGTTTATAAAATTTAGGACAAAAAGTGGTACCC
CAATAAGCCTAATTGGGGCCCGAATTGGGGTGCCCTACTTTTTACGAACA
CCCCATTATGTTTTTTAATATCATTATTAAATTTTTCTCCTCGTTCTTCC
GTCAGTGAATTTTAATCATTGATTTATTTTATTTTATTTCTATCAAAGTT
AAATACAAAGAAATAAATCATGAATTTGTTGTTTTAAATGGGTCTTGTGA
TGTTGAAATGCCAAGAGCAGAAAATACTTCTGCAACATCAATCAACTCCA
AAAACACTTCAGTGAGTGCCAGTGCTGTTCATCCTACTAAATTACAGGCT
AGTGAAGAGAAATCCAGTCTACAAAATGGACGTGCAGTTGATCATTTATT
CACAACCACCAATCGCTGTAAAGCATCTCTCTTCATTAATACAGGAGAAA
ATCGAACTATCCATGTGGTACATTATGCCCAACGAAAGCAAGACTTGTAC
ACACAATCAACATTCTCCAAAACAGAGGATGAAAGTTATGAATCTAAAGT
TACGTTATTTTTTATTCATGGAGTTGGTGGAACTATTCAAATGTGGGAAC
CCCAGATACATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTGGAT
TTGCTGGGACATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCA
ATTCACAGAGCTGGCCTCTGATGTAATGTTTATTTTTGATAGATTTAGTA
AACGTAGGAACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACA
ATGTTATCGAAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTC
TGGTGGAGGACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTT
TACCATTACCTTTCTTTGTTTGTATAAGAAAAAGTGTGGTCAAGATGTTT
CAAAGGTAAAACCTTATCTTTTTTCGTATTTTGATGTTTGATGAAAACAG
GTTTCTGGATTTCAACCATGGAAAATGTTCGATAACTATTTCAAAAGAAG
GTTTGCATATGTACTTTAATCCAAAATAATCACTGATAAATTATACTAGA
AAATCTATTGATACCTCGTCTTATTCTTGTGGAAAGTTTTTCTAGTAAAC
TTTTCATTTTTATTTTTCTTCCCAAGGGCTTAGAATATATAAATTAGATT
GGATCATTTTACAAATTAATTGTGTTTAAATTGAACGTTCTTTAAAACGG
TAAACTATTTACTCCATTTTTCAGGATGGCATTTCATGAAGAAACAAGTG
ATACTGTTCGTCAAAAGATTTCAACTTTTGAGATTTCATCTTTCGCTCTT
AAAGCCATCATGCAAGGACAGGTAAAGTGTGAAGCCAATACAAACGGATA
AATTATGTTGAACCTAGGTAACAGCAGTAACAGTGTTGTGAAAGACAGAT
AAGTTATCATTTAAAAGATTTCTGCAGGAGTAATTAGTTATTTATAAGAC
CGTCGCGTTCTTTCAAACCTCTTGAAGCCTCATAGAAAGTACAGGGAGGT
GATGAAATTCAGCTAAAATCTAAGAAAAAATTGATGATAATTTGAGAAAA
AAATACCGATACAGATGGGGTCTCACCCGGTGGAACCAGCGAACCaaaac
tcgatggggattaatatttgaattccattgttttcaagccagataattca
gtagggatggaaaatgtatttgaaaaataatttgcagtgaggattcgttt
atctgattattttcagcggggaaaAAATGAGAGTAAAATTTCCCACGAGG
GACAATTTTTTGCCaatattttccagtgggaagggtttccAGTGAATCTG
TGAGAAGAGAGTGTACACACAAGCTACACAAGCTCCATTCAAAAGCAATA
AGTAAAGAGAGTCTTCATAATAAAAAATTGTCTTTATATACCACGTGGAG
GGAGTTTTATTGCAACCAATTTCCAACTTTCCCGATGATTCTGTGACCAA
AAAGATGAAGGGAAAGAGGAAATTTCCTCAAGCGAGACTGAAAGTTTGGA
AAAACCTAAGAAAAAGATTAACGATGATTTAATAAATACAGATGTACAAG
TGTATAACTAATGCAATATATACTAACAGCCTTGGACTGAATGatatttt
gtttatgttttttgtttttgtttccaGAATTGGCACGAGTCAACAGAAGA
ATATCATGCTAGTTTGAATCTACCTGTACTGTTGGTTTATGGGAAAGGTG
ATCAGTTTGTTACTCTGGGTGG

Coding sequence (CDS) from alignment at sc0002093:16877..19198+

>TCONS_00039391 ID=TCONS_00039391|Name=TCONS_00039391|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at sc0002093:16877..19198+ (Clytia hemisphaerica)
ATGCCAAGAGCAGAAAATACTTCTGCAACATCAATCAACTCCAAAAACAC
TTCAGTGAGTGCCAGTGCTGTTCATCCTACTAAATTACAGGCTAGTGAAG
AGAAATCCAGTCTACAAAATGGACGTGCAGTTGATCATTTATTCACAACC
ACCAATCGCTGTAAAGCATCTCTCTTCATTAATACAGGAGAAAATCGAAC
TATCCATGTGGTACATTATGCCCAACGAAAGCAAGACTTGTACACACAAT
CAACATTCTCCAAAACAGAGGATGAAAGTTATGAATCTAAAGTTACGTTA
TTTTTTATTCATGGAGTTGGTGGAACTATTCAAATGTGGGAACCCCAGAT
ACATTATTTCCTTACTCTTGGTTATGAAATTATAGCATTGGATTTGCTGG
GACATGGTCAAAGTGGGAAACCACGTGTATATAATGCATATCAATTCACA
GAGCTGGCCTCTGATGTAATGTTTATTTTTGATAGATTTAGTAAACGTAG
GAACGTTTTGATTGGACACTCTTATGGGAGTTCATTTTGCACAATGTTAT
CGAAAGAACGAGCACGTAAAGTTTGTAAAACTGTTTTAATTTCTGGTGGA
GGACCAACATTATTGATGCCAGATCGTTGTAGTGCTTTTTGTTTACCATT
ACCTTTCTTTGTTTGTATAAGAAAAAGTGTGGTCAAGATGTTTCAAAGGA
TGGCATTTCATGAAGAAACAAGTGATACTGTTCGTCAAAAGATTTCAACT
TTTGAGATTTCATCTTTCGCTCTTAAAGCCATCATGCAAGGACAGAATTG
GCACGAGTCAACAGAAGAATATCATGCTAGTTTGAATCTACCTGTACTGT
TGGTTTATGGGAAAGGTGATCAGTTTGTTACTCTGGGTATGCCAAGAGCA
GAAAATACTTCTGCAACATCAATCAACTCCAAAAACACTTCAGTGAGTGC
CAGTGCTGTTCATCCTACTAAATTACAGGCTAGTGAAGAGAAATCCAGTC
TACAAAATGGACGTGCAGTTGATCATTTATTCACAACCACCAATCGCTGT
AAAGCATCTCTCTTCATTAATACAGGAGAAAATCGAACTATCCATGTGGT
ACATTATGCCCAACGAAAGCAAGACTTGTACACACAATCAACATTCTCCA
AAACAGAGGATGAAAGTTATGAATCTAAAGTTACGTTATTTTTTATTCAT
GGAGTTGGTGGAACTATTCAAATGTGGGAACCCCAGATACATTATTTCCT
TACTCTTGGTTATGAAATTATAGCATTGGATTTGCTGGGACATGGTCAAA
GTGGGAAACCACGTGTATATAATGCATATCAATTCACAGAGCTGGCCTCT
GATGTAATGTTTATTTTTGATAGATTTAGTAAACGTAGGAACGTTTTGAT
TGGACACTCTTATGGGAGTTCATTTTGCACAATGTTATCGAAAGAACGAG
CACGTAAAGTTTGTAAAACTGTTTTAATTTCTGGTGGAGGACCAACATTA
TTGATGCCAGATCGTTGTAGTGCTTTTTGTTTACCATTACCTTTCTTTGT
TTGTATAAGAAAAAGTGTGGTCAAGATGTTTCAAAGGATGGCATTTCATG
AAGAAACAAGTGATACTGTTCGTCAAAAGATTTCAACTTTTGAGATTTCA
TCTTTCGCTCTTAAAGCCATCATGCAAGGACAGAATTGGCACGAGTCAAC
AGAAGAATATCATGCTAGTTTGAATCTACCTGTACTGTTGGTTTATGGGA
AAGGTGATCAGTTTGTTACTCTGGGTATGCCAAGAGCAGAAAATACTTCT
GCAACATCAATCAACTCCAAAAACACTTCAGTGAGTGCCAGTGCTGTTCA
TCCTACTAAATTACAGGCTAGTGAAGAGAAATCCAGTCTACAAAATGGAC
GTGCAGTTGATCATTTATTCACAACCACCAATCGCTGTAAAGCATCTCTC
TTCATTAATACAGGAGAAAATCGAACTATCCATGTGGTACATTATGCCCA
ACGAAAGCAAGACTTGTACACACAATCAACATTCTCCAAAACAGAGGATG
AAAGTTATGAATCTAAAGTTACGTTATTTTTTATTCATGGAGTTGGTGGA
ACTATTCAAATGTGGGAACCCCAGATACATTATTTCCTTACTCTTGGTTA
TGAAATTATAGCATTGGATTTGCTGGGACATGGTCAAAGTGGGAAACCAC
GTGTATATAATGCATATCAATTCACAGAGCTGGCCTCTGATGTAATGTTT
ATTTTTGATAGATTTAGTAAACGTAGGAACGTTTTGATTGGACACTCTTA
TGGGAGTTCATTTTGCACAATGTTATCGAAAGAACGAGCACGTAAAGTTT
GTAAAACTGTTTTAATTTCTGGTGGAGGACCAACATTATTGATGCCAGAT
CGTTGTAGTGCTTTTTGTTTACCATTACCTTTCTTTGTTTGTATAAGAAA
AAGTGTGGTCAAGATGTTTCAAAGGATGGCATTTCATGAAGAAACAAGTG
ATACTGTTCGTCAAAAGATTTCAACTTTTGAGATTTCATCTTTCGCTCTT
AAAGCCATCATGCAAGGACAGAATTGGCACGAGTCAACAGAAGAATATCA
TGCTAGTTTGAATCTACCTGTACTGTTGGTTTATGGGAAAGGTGATCAGT
TTGTTACTCTGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023757XLOC_023757Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039391-proteinTCONS_00039391-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039391-exon-sc0002093-1491911889:16877..17881TCONS_00039391-exon-sc0002093-1491911889:16877..17881Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1510915933:16877..17881TCONS_00039391-exon-sc0002093-1510915933:16877..17881Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1575043694:16877..17881TCONS_00039391-exon-sc0002093-1575043694:16877..17881Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1491911889:18201..18297TCONS_00039391-exon-sc0002093-1491911889:18201..18297Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1510915933:18201..18297TCONS_00039391-exon-sc0002093-1510915933:18201..18297Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1575043694:18201..18297TCONS_00039391-exon-sc0002093-1575043694:18201..18297Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1491911889:19104..19198TCONS_00039391-exon-sc0002093-1491911889:19104..19198Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1510915933:19104..19198TCONS_00039391-exon-sc0002093-1510915933:19104..19198Clytia hemisphaericaexon
TCONS_00039391-exon-sc0002093-1575043694:19104..19198TCONS_00039391-exon-sc0002093-1575043694:19104..19198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002093supercontigsc0002093:16877..19198 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.43788	4.31354	2.62481	2.29521	9.05959	6.65773	7.78421	7.26814	7.67749	7.80523	8.26176	8.8783	1.55368	1.53079	1.00225	1.51487	1.12958	1.88178	4.46687	6.26406	2.80587	2.67852	5.62733	4.99536	1.62058	2.35757	3.62339	3.88102	3.85389	4.41537
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000073AB_hydrolase_1
IPR029058AB_hydrolase
Blast
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BLAST of TCONS_00039391 vs. Swiss-Prot (Human)
Match: ABHD8 (Protein ABHD8 OS=Homo sapiens GN=ABHD8 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.033e-57
Identity = 95/209 (45.45%), Postives = 133/209 (63.64%), Query Frame = 2 
Query:  572 TEDESYESKVTLFFIHGVGGTIQMWEPQIHYFLTLGYEIIALDLLGHGQSGKPRVYNAYQFTELASDVMFIFDRFSKRRNVLIGHSYGSSFCTMLSKERARKVCKTVLISGGGPTLLMPDRCSAFCLPLPFFVCIRKSVVKMFQRMAFHEETS--DTVRQKISTFEISSFALKAIMQGQNWHESTEEYHASLNLPVLLVYGKGDQFVTL 1192
            T  +  ++ V LFFIHGVGG++ +W+ Q+ +F+ LGYE++A DL GHG S  P+V  AY F  LA D+  IF R++K+RNVLIGHSYG SFCT L+ E    V K ++I+GGGPT L P  CS F +P     C+   +   F +  F  + +    + ++ + F +SSF L+A+M GQ W E  E YHA L +PVLLV+G  D+FV +
Sbjct:  167 TSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSFCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPV 375
The following BLAST results are available for this feature:
BLAST of TCONS_00039391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABHD83.033e-5745.45Protein ABHD8 OS=Homo sapiens GN=ABHD8 PE=2 SV=1[more]
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