TCONS_00039390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039390
Unique NameTCONS_00039390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039390 ID=TCONS_00039390|Name=TCONS_00039390|organism=Clytia hemisphaerica|type=transcript|length=878bp
aataaaaacactaaagaaaaattaggacaaacatttttatataatcaatt
ttttttaataatttcagCATGGCCAGTGTTAGTAAAAATGAGTATAGATA
AAAAGACCATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTGGCC
ATTTCTTCAATTGGCACTCCATCATGGGTCGAAAATAATTTTGCAGGGAC
AACAAGGCTTGGTTTAACGAAAATTTGTGTTCTGTTCAATGGACAAGATC
CTCAAAATGAAGAATGCGAAGCACTCAAAATGCCTTCATACTGGGCTGTC
ACTCTGATCTTCATTGTAATTGGTATATGTTTGATTTTCTTGACTGTATT
GCTTTTATTATTATCAATATGGCGCACACACTCAGAGAAAATGGCTCGCA
TAATTGGTTTCCTTGCTAtgTTATTCTTTTGTGTGGCTTGCATCGTTTTC
CCTTTTGGATTTTACATTGAAGAGATCGGTGGACAAGCTTACAAGCTACC
TGCGTATACACAAGTTGGATATTCTTATTATTTATTCTGCGGAGCTGTTT
CATTGCTCACCGCTGCTGTAACACTATGTAACTTGGATGTCATTAGAGAA
AACTTTAATCACAGAATGAACCGTTAATTCTGGAACATTCTTGTTGTTGG
GTGTGAATCTGGTTATGAATTGTTAGAGGTTTGCTTCATGTCACTGATTT
TtatgtatttattttaaatattgTATAGTTGttatggacatgtttttttt
tgactgtaccaaaatgccgattttcaatcaacccggttcaaatcggcact
aacagagacagctgaaccctttcttatcgttattcaaaaataagaaaata
gattagTAGCTCTGTCCGATACTTTTTG
Run BLAST on NCBI

transcript from alignment at sc0002090:15226..17639+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039390 ID=TCONS_00039390|Name=TCONS_00039390|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at sc0002090:15226..17639+ (Clytia hemisphaerica)
aataaaaacactaaagaaaaattaggacaaacatttttatataatcaatt
ttttttaataatttcagCATGGCCAGTGTTAGTAAAAATGAGTATAGATA
AAAAGACCATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTGGCC
ATTTCTTCAATTGGCACTCCATCATGGGTCGAAAATAATTTTGCAGGTAC
GTATTATATTTTTTGCGAATCATTCTTTAAATTAATTTGGGTAGAATTCA
TGGTCGTCTCCGAAAAAATCAAAGAGAGAGTGAGTCGAAAGTACACTGAT
TTTAATGttgattttctaaattgtaGTGAGTGAATTATAAGATTTATGTC
AAAGTATTTGATAGGGCTTTACAATATAAAAATACTAACTTACTGAGTGT
AATATTTTTAATAAGTGATAGGTGGATTCCACTGGATTCCATCAAAGAGT
GCTCCATGATCAGGCCCAAAGCTTCATACAgtgtacaagaaaaaacaaaa
tttgaattatagtaCTTTCAGTTTCATCTTTATCGAATCGTCAGctatca
aatgaaaaatgactattGCTATgattttatgttgaaaaatttataCACTG
TAATATTTCTACAAATCAAATTTGTCTTTAGGGACAACAAGGCTTGGTTT
AACGAAAATTTGTGTTCTGTTCAATGGACAAGATCCTCAAAATGAAGAAT
GCGAAGCACTCAAAATGCCTTCATACTGGGCTGTCACTCTGATCTTCATT
GTAATTGGTATATGTTTGATTTTCTTGACTGTATTGCTTTTATTATTATC
AATATGGCGCACACACTCAGAGAAAATGGCTCGCATAATTGGTTTCCTTG
CTAgtaagtttatttttattttttagaaggTTAATAcgtattattatcca
tatagcggtcattaagtaagccattaaaggttcaatcggcgggcggtatt
gaaaggttttgtgatTCAAATTGTGATACCCGCGCTGAGGAAACTAAAGC
GTcaggcttcagagggctgaaatatcattaaccacCCGAGTATAGggcaa
taacgtcatttgcggcccgctcggaattggattgaagtcgttgcattgaa
gcgaagagactaaaataacgtcagaaaaaaacaatttttggtcatttgca
gCCCGCTCGCAAGGTGCTAAAACTTtgttgaagcgaaaagactcggttga
cgctagaaaaaaaacgttgtttgaatgtccgatatggataataatagtaa
tagcgataagttttcgttcgttgttgtcattaattctgcccttgcagttt
gattattagccctcctAGTAccatttgcgccctccgcttcgcgtcgggcc
caaatgacactatcgggcgaataatcaaactacgcgggcagaaaataaca
acaacgacctcaaactgaacgctattgttataataGACTGTGTCAGATTA
TTGGTTATGAGGAATCTAGACATCAGCTTGAAGTCAACTGACTACTTTGT
ATTGGCTAATAACCTCATTTAAAAAAGTGTTATTGTTGTATTTGATATTA
CAAGGAAGCTGATGAAATTGTTATGAGCTAAAACATACCTCCATGCTCTC
CATGCTCTATTAATCATACCATGCTGGGATATTATAAACTAACTGTCCCT
CAAAGGTTGTCATTTCCTAGGATATCTTATGGGTCTCCAGGTGCAAATGG
CaattaccttaagagaagaaattttggcgagaatgAATTTAGGCAAATGA
CCCATTTTTGTTTAATACTTTAACtgaaaaaaagagggaaaaagggtttt
taggagaaatagagactaaattgaaagaaaatgaaatttggcgagaattt
attttggcgaatgacctatAAATTATTATCTACTGTCGCATCCAAGGATC
TCTTTTGAAGAGTGGCTTCTTTTACCAATTTCAAcgtttcttttcatttt
caagtgTTATTCTTTTGTGTGGCTTGCATCGTTTTCCCTTTTGGATTTTA
CATTGAAGAGATCGGTGGACAAGCTTACAAGCTACCTGCGTATACACAAG
TTGGATATTCTTATTATTTATTCTGCGGAGCTGTTTCATTGCTCACCGCT
GCTGTAACACTATGTAACTTGGATGTCATTAGAGAAAACTTTAATCACAG
AATGAACCGTTAATTCTGGAACATTCTTGTTGTTGGGTGTGAATCTGGTT
ATGAATTGTTAGAGGTTTGCTTCATGTCACTGATTTTtatgtatttattt
taaatattgTATAGTTGttatggacatgtttttttttgactgtaccaaaa
tgccgattttcaatcaacccggttcaaatcggcactaacagagacagctg
aaccctttcttatcgttattcaaaaataagaaaatagattagTAGCTCTG
TCCGATACTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023756XLOC_023756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039390-exon-sc0002090-1491911889:15226..15421TCONS_00039390-exon-sc0002090-1491911889:15226..15421Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1510915933:15226..15421TCONS_00039390-exon-sc0002090-1510915933:15226..15421Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1575043694:15226..15421TCONS_00039390-exon-sc0002090-1575043694:15226..15421Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1491911889:15857..16078TCONS_00039390-exon-sc0002090-1491911889:15857..16078Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1510915933:15857..16078TCONS_00039390-exon-sc0002090-1510915933:15857..16078Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1575043694:15857..16078TCONS_00039390-exon-sc0002090-1575043694:15857..16078Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1491911889:17180..17639TCONS_00039390-exon-sc0002090-1491911889:17180..17639Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1510915933:17180..17639TCONS_00039390-exon-sc0002090-1510915933:17180..17639Clytia hemisphaericaexon
TCONS_00039390-exon-sc0002090-1575043694:17180..17639TCONS_00039390-exon-sc0002090-1575043694:17180..17639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002090supercontigsc0002090:15226..17639 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.42761	7.51974e-07	0.00779961	22.2486	0	0	0	0	12.8929	18.6004	36.3358	21.9735	17.8522	8.87476	9.02358	19.7472	9.30681	9.81923	29.5228	24.2085	5.60031	6.6281	6.02273	9.11375	0	0	21.769	20.6519	24.3763	31.341
Blast
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BLAST of TCONS_00039390 vs. Swiss-Prot (Human)
Match: CP052 (Uncharacterized protein C16orf52 OS=Homo sapiens GN=C16orf52 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 5.615e-25
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:  169 PSWVENN-FAGTTRLGLTKICVLFNGQDPQNEECEALKMPSYWAVTLIFIVIGICXXXXXXXXXXXSIWRTHSEKMARIIGFLAMLFFCVACIVFPFGFYIEEIGGQAYKLPAYTQVGYSYYLF 537
            P W+     AG   +GL + C   +G+D     C   ++P  W  TL FI++GI  + +T  LL+ S WR  + K AR I F  M+ FC+A ++FP GFYI E+GGQ YKLP  T VG SY LF
Sbjct:   26 PDWINTGESAGALTVGLVRQCQTIHGRD---RTCIPPRLPPEWVTTLFFIIMGIISLTVTCGLLVASHWRREATKYARWIAFTGMILFCMAALIFPIGFYINEVGGQPYKLPNNTVVGSSYVLF 146
The following BLAST results are available for this feature:
BLAST of TCONS_00039390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP0525.615e-2543.55Uncharacterized protein C16orf52 OS=Homo sapiens G... [more]
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