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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039389 ID=TCONS_00039389|Name=TCONS_00039389|organism=Clytia hemisphaerica|type=transcript|length=881bp
gaaaaaatgaggaaaatgagggaacaaaagtaaaaaagaatcTAGAATTC
AGCATTTATGGTCATAACAGCATGGCCAGTGTTAGTAAAAATGAGTATAG
ATAAAAAGACCATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTG
GCCATTTCTTCAATTGGCACTCCATCATGGGTCGAAAATAATTTTGCAGG
GACAACAAGGCTTGGTTTAACGAAAATTTGTGTTCTGTTCAATGGACAAG
ATCCTCAAAATGAAGAATGCGAAGCACTCAAAATGCCTTCATACTGGGCT
GTCACTCTGATCTTCATTGTAATTGGTATATGTTTGATTTTCTTGACTGT
ATTGCTTTTATTATTATCAATATGGCGCACACACTCAGAGAAAATGGCTC
GCATAATTGGTTTCCTTGCTAtgTTATTCTTTTGTGTGGCTTGCATCGTT
TTCCCTTTTGGATTTTACATTGAAGAGATCGGTGGACAAGCTTACAAGCT
ACCTGCGTATACACAAGTTGGATATTCTTATTATTTATTCTGCGGAGCTG
TTTCATTGCTCACCGCTGCTGTAACACTATGTAACTTGGATGTCATTAGA
GAAAACTTTAATCACAGAATGAACCGTTAATTCTGGAACATTCTTGTTGT
TGGGTGTGAATCTGGTTATGAATTGTTAGAGGTTTGCTTCATGTCACTGA
TTTTtatgtatttattttaaatattgTATAGTTGttatggacatgttttt
ttttgactgtaccaaaatgccgattttcaatcaacccggttcaaatcggc
actaacagagacagctgaaccctttcttatcgttattcaaaaataagaaa
atagattagTAGCTCTGTCCGATACTTTTTG Run BLAST on NCBI protein sequence of TCONS_00039389-protein >TCONS_00039389-protein ID=TCONS_00039389-protein|Name=TCONS_00039389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MVITAWPVLVKMSIDKKTIISSVLLVLSNSLAISSIGTPSWVENNFAGTT
RLGLTKICVLFNGQDPQNEECEALKMPSYWAVTLIFIVIGICLIFLTVLL
LLLSIWRTHSEKMARIIGFLAMLFFCVACIVFPFGFYIEEIGGQAYKLPA
YTQVGYSYYLFCGAVSLLTAAVTLCNLDVIRENFNHRMNR Run BLAST on NCBI transcript from alignment at sc0002090:4896..17639+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039389 ID=TCONS_00039389|Name=TCONS_00039389|organism=Clytia hemisphaerica|type=transcript|length=12744bp|location=Sequence derived from alignment at sc0002090:4896..17639+ (Clytia hemisphaerica)
gaaaaaatgaggaaaatgagggaacaaaagtaaaaaagaatcTAGAATTC
AGCATTTATGGTCATAACAGGTATATGTCTTATGGTAATGACAGATAGAC
TTGGCAGGGTAGTATACGGTAGTATGAAAATTGAACTAGTGTattactag
acggttcccgatANCAATTCAGCATTTATCGTCATAACAGGTATATGTCT
TATGGTAATGACAGATAGACTTGGCAGGGTAGTATACGGTAGTATGAAAA
TTGAACTAGTGTattactagacggttcccgtcgtcgcaaacgcgggttaa
cggttttgcttgtgctgcacatcaaaagcctttaaaatactataatgtgg
gttaattcctgacatcgttttggcttaaaatgccgccaaatacaataata
aaaattatacttctaaactttctacattagtcaaaattttgtgtctgtaa
gcctcgatgatatgtctttttaagataacggaagtttgtgttcaatgaat
AAATGTCGTAAACGTaagtgaccctgtcaaaattaaattatcgagggtac
ccgtcgttgcagacgcccaaaggtgtctgatttggtgagagggttgcttc
taggaaagaaaaagccttagttgtgaaggagaggctcgcgctttgcgttt
gagcactgaaggttttcccgtttgttggcttcacatgcggacagcttaag
acagacgcatatgcaatgcaaccagcattgaaacctttttaaataatgtt
agacaaagtttaatcatcaaacaacaatgttggattttgttgcgtgtgtt
gatatcaaataattcgaaatcgtgcaacaaaaatgccacacctttttatt
tgaaactttgtgacgtcaaactttttcatgaaattgacgtcagaactttt
ttcgtttacaaatagcagtgtagagtcttctctaatccgagttttctacg
cttgtcaaacttagcgcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCATTCTTAATGTAATTATTATCATCAAAACTCTTTTAAATGATACAA
AGTTCAAAACATATATGGTCTTTATTTTACTTGTTTCTCCCGCCATGCAT
GTCTTCTCACTTGCTTGCTAATAACAAGCCACCAATGTCaatcgaagaaa
aaaatttggaaactagTAACAAGTGGGAAATATCAGGATCTCCCATTAAT
CCAAATACCGGGATCCCGATATTGCACTGGAAACAAGGTTACGCCGTAGT
AAATATATGGCCCGAACATGGGCCGAtgtggttttattttttgtggcccg
aacatggcccgaacgcCAAATAGTATCCCTCAGCCACAACAGAAACCAGT
GTTAGTTCTGgtattaatttttggaacttcTGGACATCAGACAAagtttg
tttcaaaaataatgcGCAACGGACGCACTGGGCTCTGGGTGTTGAGATTG
TCTGGTGTTAAAAAGTATCTTCATCCAACACCAGACTTTGCGTGTCCGGG
TCTTCAAGAAGCAAAATATTTANCACCTAGATCCGcacactgccggatag
gctatctcccagaaattttgccggacctcaaacactgacccatttacatg
tgcagaattTAACTTTAGCGTGTGAACAagcaaggccttaaaaatcgaag
cgcggTCTCCAGCTGTCTCCAgctgtctcaggaattgaatgacaaatttt
ggttggttgattttggctgctgcacgttttattttgtttcaaactttcaa
gttttcaaattaattgtcttacaaacttgattcaggtaactctcatcctt
gttgttgcaaatacatcctctagatgactgatgttattttttctgaaagc
ttgatttcctagtgtgactaactgttatATATTTTAATCCATTGTTTAGC
AATTGATGTTGAAAATCTTCATTGATATCattaatttaattatttatttt
taattaatattCATTCTTAATGTAATTATTATCATCAAAACTCTTTTAAA
TGATACAAAGTTCAAAACATATATGGTCTTTATTTTACTTGTTTCTCCCG
CCATGCATGTCTTCTCACTTGCTTGCTAATAACAAGCCACCAATGTCaat
cgaagaaaaaaatttggaaactagTAACAAGTGGGAAATATCAGGATCTC
CCATTAATCCAAATACCGGGATCCCGATATTGCACTGGAAACAAGGTTAT
GCCGTAGTAAATATATGGCCCGAACATGGGCCGATGTGGTTTTATTTTTa
gtggcccgaacatggcccgaacgcCAAATAGTATCCCTCAGCCACAACAG
AAACCAGTGTTAGTTCTGgtattaatttttggaacttcTGGACATCAGAC
AAagtttgtttcaaaaataatgcGCAACAGACGCACTGGGCTCTGGGTGT
TGAGATTGTCTGGTGTTAAAAAGTATCTTCATCCAACACCAGACTTTGCG
TGTCCGGGTCTTCAAGAAGCAAAATATTTACAGGGTTAGGTACTCTCGAT
TCACAAATTGCAAACAAAGTCTTTCATAGTgtctttataaagggggggga
ccAATTTCCCAATTTTGGATGGGTgagggggaaaatgaaaatttgaatag
taaagggggaGTAGTAAAGGGGGAGGGGGGAAACttcgatagttggcaaa
tttggtggggagtgtgaaatcacttcaactttatctcagcaaccaaggtc
agtccacatgatatcatgtgattagatcatgattgaaaaattcaCTAGGC
ATAAAAACTGTATTGTCAGTCAGGAATAACGCCTTACTTAGGACATCATG
TCTTAATTTGGATGTACTAACTAGGAAAGAAAAAATGTCCTCACTAGgcc
attttttctatttttgcctataacacaaaatcaaaaaaagtgcGCACTTT
CTTACCATCGTCAATCANgatttaattatttatttttaattaatattCAT
TCTTAATGTAATTATTATCATCAAAACTCTTTTAAATGATACAAAGTTCA
AAACATATATGGTCTTTATTTTACTTGTTTCTCCCGCCATGCATGTCTTC
TCACTTGCTTGCTAATAACAAGCCACCAATGTCaatcgaagaaaaaaatt
tggaaactagTAACAAGTGGGAAATATCAGGATCTCCCATTAATCCAAAT
ACCGGGATCCCGATATTGCACTGGAAACAAGGTTATGCCGTAGTAAATAT
ATGGCCCGAACATGGGCCGATGTGGTTTTATTTTTagtggcccgaacatg
gcccgaacgcCAAATAGTATCCCTCAGCCACAACAGAAACCAGTGTTAGT
TCTGgtattaatttttggaacttcTGGACATCAGACAAagtttgtttcaa
aaataatgcGCAACGGACGCACTGGGCTCTGGGTGTTGAGATTGTCTGGT
GTTAAAAAGTATCTTCATCCAACACCAGACTTTGCGTGTCCGGGTCTTCA
AGAAGCAAAATATTTACAGGGTTAGGTACTCTCGATTCACAAATTGCAAA
CAAAGTCTTTCATAGTgtctttataaaggggggggaccAATTTCCCAATT
TTGGATGGGTgagggggaaaatgaaaatttgaatagtaaagggggaGTAG
TAAAGGGGGAGGGGGGAAACttcgatagttggcaaatttggtggggagtg
tgaaatcacttcaactttatctcagcaaccaaggtcagtccacatgatat
catgtgattagatcatgattgaaaaattcaCTAGGCATAAAAACTGTATT
GTCAGTCAGGAATAACGCCTTACTTAGGACATCATGTCTTAATTTGGATG
TACTAACTAGGAAAGAAAAAATGTCCTCACTAGgccattttttctatttt
tgcctataacacaaaatcaaaaaaagtgcGCACTTTCTTACCATCGTCAA
TCAAAAGAGCACCAAAAAATAAAGCTTCTTGgtgattttcaaatatttgg
gtcaaagaaatcaagaaatattCTAATATGAAAACTCAAGCCCTAAAACC
TAGTCTATATGTTACAAAAACCTGAAATTTTATGATGTAGGCAGTCCTTT
ATTTATAAAATTGGGAATTTTCATAATGGTAAACCAAGTGTTTGCAGCAG
TCATCTTTCAAAACGAGTGAAAATGAATTAAAGAGCATATAAATTGTACT
TTCAAAGACACATAGAGAAAGAACCCTTCCGcagattttgaagaaatttt
caacataTATCAATTAAAGGTCGCTCTTTCGATTGGTTATGTTTTAGCAT
GCACATTTTCCTCTAAAATGCCTAAAATAGGGGTTCCAATTAAAAATATC
CTACTTAGGCCATCCATGGCCTAATGAGGACATAAAAAATGTCCTTCTTA
GGCCATTGTCCTAACTAAGACATTGTTCCTGGCtgactgtttgtttacat
taacccattttcgttctattttgtctagtattccttttgcagcaaaattt
tacgtttgtcaggttgaaatttgagaaatttatatgggtatatgggggga
actgatattttcataattttctgtagggaaagcaaaaaagaggggggaaa
ctaaaaaaactgaaaagtcatagggggaaaaaaagagaaggatatacaaa
aaaaaaaatcaaaaatgtggtgggggaacaaaccctggaggacacaaTGA
AAGCTAGAAagtattggaagtttatcgtgacttggatcacgagatttacg
tttggctacgtttcgagagattcttctcccatcatcgggcaatgtGGAAG
ATGTTTTCCCCACTATTTGTACTGATAGACCTTCTGATTACCCATAATTA
TCAAGTGTAATTTCCTtgctgtcaactgctctaacttgggactatctgac
aaaactgCCAACGAGACTATcatcggccaccatttcaccgaaactccaaa
gtcatttgatttgagttaataaatggcgtattaaaaaatacacgatttct
cttttgcaccaagtaggcttttaaatcgaaatttgaaaaaaatccgtaga
ccaagttagtggcaaaacgatggagcgtttgacgtcactcgcgcggcaag
ttacacactggttaattgttaatcccatcgggcgataggatACTTGGtga
agttatcaaaacaaatttgttgtcaaagagatttaacagtaagtgaaaat
acagggccagatatcaacagtcccatgaaAACGACTGAGAAACCTGAAAG
acaatgcataatatttgaaaaaaaatgtgttcatttcaatgtttcacttt
ttcaaaaatgcagttgcgctaaaaaatcatttaaagattctccaaatttc
atgacctctggaaatctatcaaaacactttacaattTGATTTCGCAAATA
AGACTTTTCAGCTTTTGAGATTACACGCCCAGCAGCCATGGAGAAACATC
TGAATTCccgccatcttgaaaattatgatgtaGCATGATTATTATTTACC
CAGGATTGTCTTGCTTTGGTcaggcatttgatggctatgcaagtttccct
ccactgatgcaagttaccctccactgatgcaagttacctgatgtCATGGT
AGCACACAGAAATTTAGAACAGTTAGCTGTGcattataaaaataatgtca
agttTAGACAATTGTCAAGATTTGTTGATGTAGTTTGACATTTCACAAGA
GCCacttcaaaattattttaatcacATGACTTGCAGCGCAATATCAAAGT
TAAATTGCTTCTCTTGAGAAAAtaattgacagattaaagtttttcacccg
tAAGGGAGTACAAAAGACTGTTCATGTAACGTCATCTCTAaaaagaacga
taaaaaagcgacaaaaagaatgACAAACTCCAACCCCTGCCCTAACCCTA
ACAAAGAACAACATATTTAGCCATCCCTAACCCCGACCTTGTGAGTAACT
ACCACCCCGAAGTATTAATTGATTTTTGCTCTTTACCCTGTTAACGACTA
GCAGTTCAAATAACAATAAATTACGCATGCatataagtctctatttgggt
gagctagAAACATTAGATAAACTAAATCAGTACAAGGGAGTTTGAAGGTG
TTATGTGGGGGTGACTTTTTTTAACTTGGCTCAATCATCCTCAGACCACA
TGtgctgtttttaactttttgaagttGTGTGAATGTTAACAAGGTTCTTG
ACAGAACATCTTTCAAATGATGATAGTgcctttattattttataattaat
ttataatttataattcaTACAATTAATTTAATCAGTTTTGACAAATATAC
AATACTTTTTTGTTACtacttaccttaagggaagaaattttggcagaaag
aaatttgaatttataggtcattcgcaaaaagaataatttaattttctttc
aatttattctctatttctcctaaaaatcctctttttcctcttttttcagc
TAAGATATTAAAAAGAAATGGATGGgtggaaaagttttttaaaggaggct
aatacagcagaattaggacgaaagagggaactttcacatacattttccca
aaaatcctgggtcgaaaattttcaaaaaatttattagCAGGGGgacagct
attaggtacccgagagttgTCCAaccaaaattttctctgattctcagatt
cagcgtgaaaagtagataacaaaaatggggttatttgttaaatttcgacc
acctggtgacgtcatcggaaaacgcccaaaacgtcaattttttgccttaa
aaatgccatttcttgGCACCAGGTGgtcaaaactttacaaataaccccat
tttctttatctacttttcacgctgaattcGTTGGaagcctcagatatttg
attttcagactttcaaaaaccgttagtaaaggggctATCGATtaacttaa
aatcgattcactcgaaaactgtaGGAGATTCAAAGggcaatttttttgtc
aattctactacaccctattagggacataatatcaaaaattcaccctgatc
taaggggtgccctacgaagtgacacaattcgcTACCTCAGCCGCTGGTCT
AATGCGAAATAGTCCCAAAATAAAATAGTcagtttttgaaattatttttt
acggCATTCTGTTATTTTGGGAAAAACAGTCGGTTATTTTGGTATTGAAG
ACCCCTTGAAACCGCCTCCAAATAtgctcataacagatcatctaTTCTGC
TCATACCAAACACTGCTTTAAAGGGATGTGGCAAATGTGATGATATTGCC
TGGTtgttcaaaacaatcaaaaccttattgctttttgcttgaaaacaata
atGAAAATTGAGGTGAAAAGTGACTGGAATCTAATGTTTCTGTTTATGAT
TGGTTgtgattgttttgctttagccaatcaccgTGCTGagaagctcattt
aatattcatccaaaTCTGGATAAATCCAAAGTGATTACAAATTTGCTTAC
AGGACCATGGCCTTCAGAGTGAACAGTACCATGCGCAGAGTAATCAGAAT
ATGCTTGGAGATTAACCTTTTCGAGTCAAAATTCCGATTATCAGGCTACA
ATTCattatatgcaccattgcaatgtcttccgttccacccaatagctgat
tggttgaaagtgacgtattgactgcttttacgtcacttccaaccaatgcg
CTATTGGTtccatgacgtaatgtcagaagacattgcagtggtgcatatca
tgaattatacTCCTCAATTGTAGAATTCATTAGAATTTCAAAGATTTGAG
TGCAGTAGCCTACCCATACTAAGCAAACTGGTGTAAACCTTGAAATTAAA
CCCTTAagaattaagaaaaatttttaataacTAGATTTCTTtgggaaaaa
acttttttgctgTAAAGTGAAAACCTTCTTGAAAAGTATCATGTTTATAG
GCtggttttatttactttaagTTCTAGAAAAATTCATCTTCTCACTTTAA
ATCACAAtatcaattttgtattttttagaataaaacCCTCTTTTCATACA
CCTTGCTCAGGATGTACTAAATATGTTTAAAACCTTGACATTGATAATTG
tgttttttattattaatttgtttaggataaagaaataaaaacactaaaga
aaaattaggacaaacatttttatataatcaatttttttaaataatttcag
CATGGCCAGTGTTAGTAAAAATGAGTATAGATAAAAAGACCATCATTTCA
TCTGTCCTGTTGGTTTTATCAAATTCACTGGCCATTTCTTCAATTGGCAC
TCCATCATGGGTCGAAAATAATTTTGCAGGTACGTATTATATTTTTTGCG
AATCATTCTTTAAATTAATTTGGGTAGAATTCATGGTCGTCCCCGAAAAA
ATCAAAGAGAGAGTGAGTCGAAAGTACACTGCTTTTAATGttgattttct
aaattgtaGCGAGTGAATTATAAGATTTATGTCAAAGTATTTTATAGGGc
tttataatataaaaatactAATATGAGTGTAATATTTTTAATAAGTGATA
GATGATTCCATCAAAGAGTGATCGATGATCAGGACCAGAGCTTCATATCA
AACAgtgtacaagaaaaaacaaaatttgaattatagtaCTTTCAGTTTCA
TCTTTATCGGATCGTCagctttcaaaagaaaaatgacaaTTGCTATGATT
TTATGTTGAAACATTTATACACTGTAATATTTCTACAAATCAAATTTGTC
TTTAGGGACAACAAGGCTTGGTTTAACGAAAATTTGTGTTCTGTTCAATG
GACANACTCCTCAATTGTAGAATTCATTAGAATTTCAAAGATTTGAGTGC
AGTAGCCTACCCATACTAAGCAAACTGGTGTAAACCTTGAAATTAAACCC
TTAagaattaagaaaaatttttaataacTAGATTTCTTtgggaaaaaact
tttttgctgTAAAGTGAAAACCTTCTTGAAAAGTATCATGTTTATAGGCt
ggttttatttactttaagTTCTAGAAAAATTCATCTTCTCACTTTAAATC
ACAAtatcaattttgtattttttagaataaaacCCTCTTTTCATACACCT
TGCTCAGGATGTACTAAATATGTTTAAAACCTTGACATTGATAATTGtgt
tttttattattaatttgtttaggataaagaaataaaaacactaaagaaaa
attaggacaaacatttttatataatcaattttttttaataatttcagCAT
GGCCAGTGTTAGTAAAAATGAGTATAGATAAAAAGACCATCATTTCATCT
GTCCTGTTGGTTTTATCAAATTCACTGGCCATTTCTTCAATTGGCACTCC
ATCATGGGTCGAAAATAATTTTGCAGGTACGTATTATATTTTTTGCGAAT
CATTCTTTAAATTAATTTGGGTAGAATTCATGGTCGTCTCCGAAAAAATC
AAAGAGAGAGTGAGTCGAAAGTACACTGATTTTAATGttgattttctaaa
ttgtaGTGAGTGAATTATAAGATTTATGTCAAAGTATTTGATAGGGCTTT
ACAATATAAAAATACTAACTTACTGAGTGTAATATTTTTAATAAGTGATA
GGTGGATTCCACTGGATTCCATCAAAGAGTGCTCCATGATCAGGCCCAAA
GCTTCATACAgtgtacaagaaaaaacaaaatttgaattatagtaCTTTCA
GTTTCATCTTTATCGAATCGTCAGctatcaaatgaaaaatgactattGCT
ATgattttatgttgaaaaatttataCACTGTAATATTTCTACAAATCAAA
TTTGTCTTTAGGGACAACAAGGCTTGGTTTAACGAAAATTTGTGTTCTGT
TCAATGGACAAGATCCTCAAAATGAAGAATGCGAAGCACTCAAAATGCCT
TCATACTGGGCTGTCACTCTGATCTTCATTGTAATTGGTATATGTTTGAT
TTTCTTGACTGTATTGCTTTTATTATTATCAATATGGCGCACACACTCAG
AGAAAATGGCTCGCATAATTGGTTTCCTTGCTAgtaagtttatttttatt
ttttagaaggTTAATAcgtattattatccatatagcggtcattaagtaag
ccattaaaggttcaatcggcgggcggtattgaaaggttttgtgatTCAAA
TTGTGATACCCGCGCTGAGGAAACTAAAGCGTcaggcttcagagggctga
aatatcattaaccacCCGAGTATAGggcaataacgtcatttgcggcccgc
tcggaattggattgaagtcgttgcattgaagcgaagagactaaaataacg
tcagaaaaaaacaatttttggtcatttgcagCCCGCTCGCAAGGTGCTAA
AACTTtgttgaagcgaaaagactcggttgacgctagaaaaaaaacgttgt
ttgaatgtccgatatggataataatagtaatagcgataagttttcgttcg
ttgttgtcattaattctgcccttgcagtttgattattagccctcctAGTA
ccatttgcgccctccgcttcgcgtcgggcccaaatgacactatcgggcga
ataatcaaactacgcgggcagaaaataacaacaacgacctcaaactgaac
gctattgttataataGACTGTGTCAGATTATTGGTTATGAGGAATCTAGA
CATCAGCTTGAAGTCAACTGACTACTTTGTATTGGCTAATAACCTCATTT
AAAAAAGTGTTATTGTTGTATTTGATATTACAAGGAAGCTGATGAAATTG
TTATGAGCTAAAACATACCTCCATGCTCTCCATGCTCTATTAATCATACC
ATGCTGGGATATTATAAACTAACTGTCCCTCAAAGGTTGTCATTTCCTAG
GATATCTTATGGGTCTCCAGGTGCAAATGGCaattaccttaagagaagaa
attttggcgagaatgAATTTAGGCAAATGACCCATTTTTGTTTAATACTT
TAACtgaaaaaaagagggaaaaagggtttttaggagaaatagagactaaa
ttgaaagaaaatgaaatttggcgagaatttattttggcgaatgacctatA
AATTATTATCTACTGTCGCATCCAAGGATCTCTTTTGAAGAGTGGCTTCT
TTTACCAATTTCAAcgtttcttttcattttcaagtgTTATTCTTTTGTGT
GGCTTGCATCGTTTTCCCTTTTGGATTTTACATTGAAGAGATCGGTGGAC
AAGCTTACAAGCTACCTGCGTATACACAAGTTGGATATTCTTATTATTTA
TTCTGCGGAGCTGTTTCATTGCTCACCGCTGCTGTAACACTATGTAACTT
GGATGTCATTAGAGAAAACTTTAATCACAGAATGAACCGTTAATTCTGGA
ACATTCTTGTTGTTGGGTGTGAATCTGGTTATGAATTGTTAGAGGTTTGC
TTCATGTCACTGATTTTtatgtatttattttaaatattgTATAGTTGtta
tggacatgtttttttttgactgtaccaaaatgccgattttcaatcaaccc
ggttcaaatcggcactaacagagacagctgaaccctttcttatcgttatt
caaaaataagaaaatagattagTAGCTCTGTCCGATACTTTTTG Coding sequence (CDS) from alignment at sc0002090:4896..17639+ >TCONS_00039389 ID=TCONS_00039389|Name=TCONS_00039389|organism=Clytia hemisphaerica|type=CDS|length=2292bp|location=Sequence derived from alignment at sc0002090:4896..17639+ (Clytia hemisphaerica)
ATGGTCATAACAGCATGGCCAGTGTTAGTAAAAATGAGTATAGATAAAAA
GACCATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTGGCCATTT
CTTCAATTGGCACTCCATCATGGGTCGAAAATAATTTTGCAGGGACAACA
AGGCTTGGTTTAACGAAAATTTGTGTTCTGTTCAATGGACAAGATCCTCA
AAATGAAGAATGCGAAGCACTCAAAATGCCTTCATACTGGGCTGTCACTC
TGATCTTCATTGTAATTGGTATATGTTTGATTTTCTTGACTGTATTGCTT
TTATTATTATCAATATGGCGCACACACTCAGAGAAAATGGCTCGCATAAT
TGGTTTCCTTGCTAtgTTATTCTTTTGTGTGGCTTGCATCGTTTTCCCTT
TTGGATTTTACATTGAAGAGATCGGTGGACAAGCTTACAAGCTACCTGCG
TATACACAAGTTGGATATTCTTATTATTTATTCTGCGGAGCTGTTTCATT
GCTCACCGCTGCTGTAACACTATGTAACTTGGATGTCATTAGAGAAAACT
TTAATCACAGAATGAACCGTTAAATGGTCATAACAGCATGGCCAGTGTTA
GTAAAAATGAGTATAGATAAAAAGACCATCATTTCATCTGTCCTGTTGGT
TTTATCAAATTCACTGGCCATTTCTTCAATTGGCACTCCATCATGGGTCG
AAAATAATTTTGCAGGGACAACAAGGCTTGGTTTAACGAAAATTTGTGTT
CTGTTCAATGGACAAGATCCTCAAAATGAAGAATGCGAAGCACTCAAAAT
GCCTTCATACTGGGCTGTCACTCTGATCTTCATTGTAATTGGTATATGTT
TGATTTTCTTGACTGTATTGCTTTTATTATTATCAATATGGCGCACACAC
TCAGAGAAAATGGCTCGCATAATTGGTTTCCTTGCTAtgTTATTCTTTTG
TGTGGCTTGCATCGTTTTCCCTTTTGGATTTTACATTGAAGAGATCGGTG
GACAAGCTTACAAGCTACCTGCGTATACACAAGTTGGATATTCTTATTAT
TTATTCTGCGGAGCTGTTTCATTGCTCACCGCTGCTGTAACACTATGTAA
CTTGGATGTCATTAGAGAAAACTTTAATCACAGAATGAACCGTTAAATGG
TCATAACAGCATGGCCAGTGTTAGTAAAAATGAGTATAGATAAAAAGACC
ATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTGGCCATTTCTTC
AATTGGCACTCCATCATGGGTCGAAAATAATTTTGCAGGGACAACAAGGC
TTGGTTTAACGAAAATTTGTGTTCTGTTCAATGGACAAGATCCTCAAAAT
GAAGAATGCGAAGCACTCAAAATGCCTTCATACTGGGCTGTCACTCTGAT
CTTCATTGTAATTGGTATATGTTTGATTTTCTTGACTGTATTGCTTTTAT
TATTATCAATATGGCGCACACACTCAGAGAAAATGGCTCGCATAATTGGT
TTCCTTGCTAtgTTATTCTTTTGTGTGGCTTGCATCGTTTTCCCTTTTGG
ATTTTACATTGAAGAGATCGGTGGACAAGCTTACAAGCTACCTGCGTATA
CACAAGTTGGATATTCTTATTATTTATTCTGCGGAGCTGTTTCATTGCTC
ACCGCTGCTGTAACACTATGTAACTTGGATGTCATTAGAGAAAACTTTAA
TCACAGAATGAACCGTTAAATGGTCATAACAGCATGGCCAGTGTTAGTAA
AAATGAGTATAGATAAAAAGACCATCATTTCATCTGTCCTGTTGGTTTTA
TCAAATTCACTGGCCATTTCTTCAATTGGCACTCCATCATGGGTCGAAAA
TAATTTTGCAGGGACAACAAGGCTTGGTTTAACGAAAATTTGTGTTCTGT
TCAATGGACAAGATCCTCAAAATGAAGAATGCGAAGCACTCAAAATGCCT
TCATACTGGGCTGTCACTCTGATCTTCATTGTAATTGGTATATGTTTGAT
TTTCTTGACTGTATTGCTTTTATTATTATCAATATGGCGCACACACTCAG
AGAAAATGGCTCGCATAATTGGTTTCCTTGCTAtgTTATTCTTTTGTGTG
GCTTGCATCGTTTTCCCTTTTGGATTTTACATTGAAGAGATCGGTGGACA
AGCTTACAAGCTACCTGCGTATACACAAGTTGGATATTCTTATTATTTAT
TCTGCGGAGCTGTTTCATTGCTCACCGCTGCTGTAACACTATGTAACTTG
GATGTCATTAGAGAAAACTTTAATCACAGAATGAACCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039389-exon-sc0002090-1491911889:4896..4965 | TCONS_00039389-exon-sc0002090-1491911889:4896..4965 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1510915933:4896..4965 | TCONS_00039389-exon-sc0002090-1510915933:4896..4965 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1575043694:4896..4965 | TCONS_00039389-exon-sc0002090-1575043694:4896..4965 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1491911889:14246..14374 | TCONS_00039389-exon-sc0002090-1491911889:14246..14374 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1510915933:14246..14374 | TCONS_00039389-exon-sc0002090-1510915933:14246..14374 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1575043694:14246..14374 | TCONS_00039389-exon-sc0002090-1575043694:14246..14374 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1491911889:15857..16078 | TCONS_00039389-exon-sc0002090-1491911889:15857..16078 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1510915933:15857..16078 | TCONS_00039389-exon-sc0002090-1510915933:15857..16078 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1575043694:15857..16078 | TCONS_00039389-exon-sc0002090-1575043694:15857..16078 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1491911889:17180..17639 | TCONS_00039389-exon-sc0002090-1491911889:17180..17639 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1510915933:17180..17639 | TCONS_00039389-exon-sc0002090-1510915933:17180..17639 | Clytia hemisphaerica | exon |
| TCONS_00039389-exon-sc0002090-1575043694:17180..17639 | TCONS_00039389-exon-sc0002090-1575043694:17180..17639 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002090 | supercontig | sc0002090:4896..17639 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019372 | Lipome_HGMIC_fus_partner-like |
| IPR020846 | MFS_dom |
Blast
BLAST of TCONS_00039389 vs. Swiss-Prot (Human)
Match: CP052 (Uncharacterized protein C16orf52 OS=Homo sapiens GN=C16orf52 PE=2 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 6.533e-25 Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1
Query: 166 GTPSWVEN-NFAGTTRLGLTKICVLFNGQDPQNEECEALKMPSYWAVTLIFIVIGICXXXXXXXXXXXSIWRTHSEKMARIIGFLAMLFFCVACIVFPFGFYIEEIGGQAYKLPAYTQVGYSYYLF 540
P W+ AG +GL + C +G+D C ++P W TL FI++GI + +T LL+ S WR + K AR I F M+ FC+A ++FP GFYI E+GGQ YKLP T VG SY LF
Sbjct: 24 ANPDWINTGESAGALTVGLVRQCQTIHGRD---RTCIPPRLPPEWVTTLFFIIMGIISLTVTCGLLVASHWRREATKYARWIAFTGMILFCMAALIFPIGFYINEVGGQPYKLPNNTVVGSSYVLF 146
The following BLAST results are available for this feature:
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