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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039372 ID=TCONS_00039372|Name=TCONS_00039372|organism=Clytia hemisphaerica|type=transcript|length=791bp
AGAAGATCAAGAAGAGAATGTTAAGGATCAAGAGAAAGAAGAAGAAAATG
ATGATGCAGAAGACCAATTACAAGGAACCAACTCTATCAAGAAGGGTCCA
TGCACCCTTGCTCTTGATGCGCTTTTAAAAAAGCTCCACATTTGCAGACA
GGCATTTCACGGAAAAAGTTTCATTGGCAATCATGTACATAAGATGCTAC
ATGAAGAAAACATCGTAAAACTTTGCAACACAGTGCCAATAATTGTTTGC
AGTGAGGGGTTCGCAGGAACTGAGGTACATGATGATAGCATTAAACTTaa
cagaaatttcaaatcactATTTGGACTCTACAGCAAGTGCCACATTGCGA
TAAACCGGGCAGATAGAATATCACCTAAAGAACTGAATTCCTTACAAAAA
GATATCGATGATTTACTATCATTCTTTCGACGGAATTTTCAAAGTGAAAC
GATAACTCCGAAATTGCACCTTTTGGAGGACCATGCGGTTAACTTCATGG
CAAAATGGGGCTCATCCTTTGGAATCTACGGCGAACAAGGAGCTGAAAGC
ATACACAAGACTTTCAACGAGATGAAAACCAATTATCACTCCATGAAGAA
TGATGTTCAACGTGTTCATGCTATGATGAGTCGTCATTACGAAATGGTAC
ATCCAAAATCAATTTCACTTCGACCATCAAAGAAGACCAAACTTTCCCCT
GAAGAGTAGAATGTGGATTAATTTCAATAAGCATAAATTTTAGTTCAATG
TTCAAAtgtttatatatatattttagcAATTTGTATTGTTT Run BLAST on NCBI protein sequence of TCONS_00039372-protein >TCONS_00039372-protein ID=TCONS_00039372-protein|Name=TCONS_00039372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
EDQEENVKDQEKEEENDDAEDQLQGTNSIKKGPCTLALDALLKKLHICRQ
AFHGKSFIGNHVHKMLHEENIVKLCNTVPIIVCSEGFAGTEVHDDSIKLN
RNFKSLFGLYSKCHIAINRADRISPKELNSLQKDIDDLLSFFRRNFQSET
ITPKLHLLEDHAVNFMAKWGSSFGIYGEQGAESIHKTFNEMKTNYHSMKN
DVQRVHAMMSRHYEMVHPKSISLRPSKKTKLSPEE Run BLAST on NCBI transcript from alignment at sc0002086:5608..6794- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039372 ID=TCONS_00039372|Name=TCONS_00039372|organism=Clytia hemisphaerica|type=transcript|length=1187bp|location=Sequence derived from alignment at sc0002086:5608..6794- (Clytia hemisphaerica)
AGAAGATCAAGAAGAGAATGTTAAGGATCAAGAGAAAGAAGAAGAAAATG
ATGATGCAGAAGACCAATTACAAGGAACCAACTCTATCAAGAAGGGTCCA
TGCACCCTTGCTCTTGATGCGCTTTTAAAAAAGCTCCACATTTGCAGACA
GGCATTTCACGGAAAAAGTTTCATTGGCAATCATGTACATAAGATGCTAC
ATGTATGAAGTTTTATATCAGACAGTGGCCTAGCCTACCTAAGCAAAGAT
TTTTGTTTTGAATTTTTTTTGCCACAAATTAACCAATATTCTTAATACTT
TATTGAATTTTGTCCAAAATTAATGCCTCTTTAAATTAATCTGTCTGACA
TGGAGTAATTTTGATCATTTTCCCAGAAGTTACAGTAAAGGGTAATATGC
TATGAAAATAAAACATTTACTGCGTTTAAATTTTTAGGAAGAAAACATCG
TAAAACTTTGCAACACAGTGCCAATAATTGTTTGCAGTGAGGGGTTCGCA
GGAACTGAGGTACATGATGATAGCATTAAACTTAACAGAAATTTCAAATC
ACTATTTGGACTCTACAGCAAGTGCCACATTGCGATAAACCGGGCAGATA
GAATATCACCTAAAGAACTGAATTCCTTACGTGAGCACCATTTTTTAAAT
ATTCATTTTACCTTTCCACACTAGTAGATAAAACTGATTTTCAAGGAAAA
CCTCATACAGTATTAGTCGTTATTTGGTTTATCAATTCCAAAATCTATTC
AGAGAATTGGTTTAATTGACTATAATAAACTTACCTCTCAGAAAAAGATA
TCGATGATTTACTATCATTCTTTCGACGGAATTTTCAAAGTGAAACGATA
ACTCCGAAATTGCACCTTTTGGAGGACCATGCGGTTAACTTCATGGCAAA
ATGGGGCTCATCCTTTGGAATCTACGGCGAACAAGGAGCTGAAAGCATAC
ACAAGACTTTCAACGAGATGAAAACCAATTATCACTCCATGAAGAATGAT
GTTCAACGTGTTCATGCTATGATGAGTCGTCATTACGAAATGGTACATCC
AAAATCAATTTCACTTCGACCATCAAAGAAGACCAAACTTTCCCCTGAAG
AGTAGAATGTGGATTAATTTCAATAAGCATAAATTTTAGTTCAATGTTCA
AATGTTTATATATATATTTTAGCAATTTGTATTGTTT Coding sequence (CDS) from alignment at sc0002086:5608..6794- >TCONS_00039372 ID=TCONS_00039372|Name=TCONS_00039372|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0002086:5608..6794- (Clytia hemisphaerica)
AAAAAGATATCGATGATTTACTATCATTCTTTCGACGGAATTTTCAAAGT
GAAACGATAACTCCGAAATTGCACCTTTTGGAGGACCATGCGGTTAACTT
CATGGCAAAATGGGGCTCATCCTTTGGAATCTACGGCGAACAAGGAGCTG
AAAGCATACACAAGACTTTCAACGAGATGAAAACCAATTATCACTCCATG
AAGAATGATGTTCAACGTGTTCATGCTATGATGAGTCGTCATTACGAAAT
GGTACATCCAAAATCAATTTCACTTCGACCATCAAAGAAGACCAAACTTT
CCCCTGAAGAGTAGGAAGAAAACATCGTAAAACTTTGCAACACAGTGCCA
ATAATTGTTTGCAGTGAGGGGTTCGCAGGAACTGAGGTACATGATGATAG
CATTAAACTTAACAGAAATTTCAAATCACTATTTGGACTCTACAGCAAGT
GCCACATTGCGATAAACCGGGCAGATAGAATATCACCTAAAGAACTGAAT
TCCTTACGAAGATCAAGAAGAGAATGTTAAGGATCAAGAGAAAGAAGAAG
AAAATGATGATGCAGAAGACCAATTACAAGGAACCAACTCTATCAAGAAG
GGTCCATGCACCCTTGCTCTTGATGCGCTTTTAAAAAAGCTCCACATTTG
CAGACAGGCATTTCACGGAAAAAGTTTCATTGGCAATCATGTACATAAGA
TGCTACATAAAAAGATATCGATGATTTACTATCATTCTTTCGACGGAATT
TTCAAAGTGAAACGATAACTCCGAAATTGCACCTTTTGGAGGACCATGCG
GTTAACTTCATGGCAAAATGGGGCTCATCCTTTGGAATCTACGGCGAACA
AGGAGCTGAAAGCATACACAAGACTTTCAACGAGATGAAAACCAATTATC
ACTCCATGAAGAATGATGTTCAACGTGTTCATGCTATGATGAGTCGTCAT
TACGAAATGGTACATCCAAAATCAATTTCACTTCGACCATCAAAGAAGAC
CAAACTTTCCCCTGAAGAGTAGGAAGAAAACATCGTAAAACTTTGCAACA
CAGTGCCAATAATTGTTTGCAGTGAGGGGTTCGCAGGAACTGAGGTACAT
GATGATAGCATTAAACTTAACAGAAATTTCAAATCACTATTTGGACTCTA
CAGCAAGTGCCACATTGCGATAAACCGGGCAGATAGAATATCACCTAAAG
AACTGAATTCCTTACGAAGATCAAGAAGAGAATGTTAAGGATCAAGAGAA
AGAAGAAGAAAATGATGATGCAGAAGACCAATTACAAGGAACCAACTCTA
TCAAGAAGGGTCCATGCACCCTTGCTCTTGATGCGCTTTTAAAAAAGCTC
CACATTTGCAGACAGGCATTTCACGGAAAAAGTTTCATTGGCAATCATGT
ACATAAGATGCTACATAAAAAGATATCGATGATTTACTATCATTCTTTCG
ACGGAATTTTCAAAGTGAAACGATAACTCCGAAATTGCACCTTTTGGAGG
ACCATGCGGTTAACTTCATGGCAAAATGGGGCTCATCCTTTGGAATCTAC
GGCGAACAAGGAGCTGAAAGCATACACAAGACTTTCAACGAGATGAAAAC
CAATTATCACTCCATGAAGAATGATGTTCAACGTGTTCATGCTATGATGA
GTCGTCATTACGAAATGGTACATCCAAAATCAATTTCACTTCGACCATCA
AAGAAGACCAAACTTTCCCCTGAAGAGTAGGAAGAAAACATCGTAAAACT
TTGCAACACAGTGCCAATAATTGTTTGCAGTGAGGGGTTCGCAGGAACTG
AGGTACATGATGATAGCATTAAACTTAACAGAAATTTCAAATCACTATTT
GGACTCTACAGCAAGTGCCACATTGCGATAAACCGGGCAGATAGAATATC
ACCTAAAGAACTGAATTCCTTACGAAGATCAAGAAGAGAATGTTAAGGAT
CAAGAGAAAGAAGAAGAAAATGATGATGCAGAAGACCAATTACAAGGAAC
CAACTCTATCAAGAAGGGTCCATGCACCCTTGCTCTTGATGCGCTTTTAA
AAAAGCTCCACATTTGCAGACAGGCATTTCACGGAAAAAGTTTCATTGGC
AATCATGTACATAAGATGCTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039372-exon-sc0002086-1575043694:6593..6794 | TCONS_00039372-exon-sc0002086-1575043694:6593..6794 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1575043694:6165..6357 | TCONS_00039372-exon-sc0002086-1575043694:6165..6357 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1575043694:5608..6003 | TCONS_00039372-exon-sc0002086-1575043694:5608..6003 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1510915933:6593..6794 | TCONS_00039372-exon-sc0002086-1510915933:6593..6794 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1510915933:6165..6357 | TCONS_00039372-exon-sc0002086-1510915933:6165..6357 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1510915933:5608..6003 | TCONS_00039372-exon-sc0002086-1510915933:5608..6003 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1491911889:6593..6794 | TCONS_00039372-exon-sc0002086-1491911889:6593..6794 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1491911889:6165..6357 | TCONS_00039372-exon-sc0002086-1491911889:6165..6357 | Clytia hemisphaerica | exon |
| TCONS_00039372-exon-sc0002086-1491911889:5608..6003 | TCONS_00039372-exon-sc0002086-1491911889:5608..6003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002086 | supercontig | sc0002086:5608..6794 - |
Blast
The following BLAST results are available for this feature:
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