TCONS_00039371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039371
Unique NameTCONS_00039371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039371 ID=TCONS_00039371|Name=TCONS_00039371|organism=Clytia hemisphaerica|type=transcript|length=972bp
GCAATGTGGAATTTTTTAGACTATAGTTTGAGGACACCTTCAAAGTATGC
TACAGGGATAAGCTGATGGAAATTTAACGCCCAAGCTTCAGAGAATGGGT
TTGGATGTTCTGGAAAGGAGAAAGATCATGCTACCAGAAGGGAATTGACT
GGCATGGTTTGTCAAGATTTCAAAGCAGACGTTATGATTACAGGTTGGGA
AATGACATACACAGCAGAATAGAATTCCTGTTGTTGGCTTTATGACGTGG
TAGCTGACTTTCATGAATAGATTTCTTGGCATTTTAGAACATTAACTTAT
ACACCTGACCTTTGTTATTTACATATGTTGACCATGGATGAGAAATGTAT
TCAATTTACCTTTTCTCACGATTATAATCTGATAGTATAATGAACAATTg
tatttcataattatatttaaaCCTGCACTTTTTAGTCAATCCATCATTCA
ATATAGCTAGACAAAGTCTATACTTCATTTGATTAACATTTAATGAAGAG
TCCCTCATCGAGGGTGCTAATGATGTATGTACCTTGTGTGAAAGATGACT
GGACTGACAGTATTTGATCaatgatttttaatttatataCTACTTAGCAT
CAGCTGGATTAGTCCCCCATTTTCTTATTAATTGTAGCTTGAAACTCTTT
TCATAATACTGTATTGGTAAACCAAAACTTTTTCAAACATTTTTGATAAT
GAAGCTTTTTACTTCTACAAAGGAATAGAACCTGAAGTAGAGAATTCTAC
AGCTAACAGGCTAGTTTCTTTGACCATCAAAGCCTAGAAAGCTTTTGGAA
CTTTTGGACCCCCCCTCCAGGCCTTAAACTTTCCATGAGCTTTTGCTTCA
CTAATTAGcataatatttagaaaaatattcttgttatttaatattttgga
ttattttcgattgttttttatcttataTATCCTTATGTAATCAGTCATTA
TTGTACACCTATTAAATCCTAA
Run BLAST on NCBI

transcript from alignment at sc0002086:1255..2776-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039371 ID=TCONS_00039371|Name=TCONS_00039371|organism=Clytia hemisphaerica|type=transcript|length=1522bp|location=Sequence derived from alignment at sc0002086:1255..2776- (Clytia hemisphaerica)
GCAATGTGGAATTTTTTAGACTATAGTTTGAGGACACCTTCAAAGTATGC
TACAGGGATAAGCTGATGGAAATTTAACGCCCAAGCTTCAGAGAATGGGT
TTGGATGTTCTGGAAAGGAGAAAGATCATGCTACCAGAAGGTGAAAATTC
TACATCATTGTCATTTTTTTCTGTGAAGCTATGTCTATTCGAAGATGCAC
TATATTTTGCGCCAGAATTATGTCACTACTGCTGTTTGTGAGTGGTTATC
GAAGGTGATTCTTGAAGTTTAAGACCTAGCTACTGCCTATCAATTACTTT
TATTGTTGTCAAACCCTATTTAAGAACCAAGCTTCATCATAATATAGAAT
TTAAAGGCTAATTTAAAGCTTCATTACCAACTATTTTTGTATCCCACGAT
ATATAATAGTGCCACAATAAGAAAGTCTTTCCTTACAATCTGTAGCATTA
CTACGTAGAGCCAGTAATCCCTACTGATCCCTATTCTTAATAGGTAAAAA
CAATTCAACCTTCAGCTCTTAGTTCGTATGTGTAAAATGCAAAAGTGACA
TATATATCGCAGGGCGTAACTGTGGGTGAAAATGACTAGAATAGCTACAG
AGTACCACAAGCACTCGGCAATTTTCTTGTCTGATTGATGGATATTTCAA
TAACAGACTTAACATGATCATTATTGTATTCCAATTTTAGGGAATTGACT
GGCATGGTTTGTCAAGATTTCAAAGCAGACGTTATGATTACAGGTTGGGA
AATGACATACACAGCAGAATAGAATTCCTGTTGTTGGCTTTATGACGTGG
TAGCTGACTTTCATGAATAGATTTCTTGGCATTTTAGAACATTAACTTAT
ACACCTGACCTTTGTTATTTACATATGTTGACCATGGATGAGAAATGTAT
TCAATTTACCTTTTCTCACGATTATAATCTGATAGTATAATGAACAATTG
TATTTCATAATTATATTTAAACCTGCACTTTTTAGTCAATCCATCATTCA
ATATAGCTAGACAAAGTCTATACTTCATTTGATTAACATTTAATGAAGAG
TCCCTCATCGAGGGTGCTAATGATGTATGTACCTTGTGTGAAAGATGACT
GGACTGACAGTATTTGATCAATGATTTTTAATTTATATACTACTTAGCAT
CAGCTGGATTAGTCCCCCATTTTCTTATTAATTGTAGCTTGAAACTCTTT
TCATAATACTGTATTGGTAAACCAAAACTTTTTCAAACATTTTTGATAAT
GAAGCTTTTTACTTCTACAAAGGAATAGAACCTGAAGTAGAGAATTCTAC
AGCTAACAGGCTAGTTTCTTTGACCATCAAAGCCTAGAAAGCTTTTGGAA
CTTTTGGACCCCCCCTCCAGGCCTTAAACTTTCCATGAGCTTTTGCTTCA
CTAATTAGCATAATATTTAGAAAAATATTCTTGTTATTTAATATTTTGGA
TTATTTTCGATTGTTTTTTATCTTATATATCCTTATGTAATCAGTCATTA
TTGTACACCTATTAAATCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023738XLOC_023738Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039371-exon-sc0002086-1575043694:2637..2776TCONS_00039371-exon-sc0002086-1575043694:2637..2776Clytia hemisphaericaexon
TCONS_00039371-exon-sc0002086-1575043694:1255..2086TCONS_00039371-exon-sc0002086-1575043694:1255..2086Clytia hemisphaericaexon
TCONS_00039371-exon-sc0002086-1510915933:2637..2776TCONS_00039371-exon-sc0002086-1510915933:2637..2776Clytia hemisphaericaexon
TCONS_00039371-exon-sc0002086-1510915933:1255..2086TCONS_00039371-exon-sc0002086-1510915933:1255..2086Clytia hemisphaericaexon
TCONS_00039371-exon-sc0002086-1491911889:2637..2776TCONS_00039371-exon-sc0002086-1491911889:2637..2776Clytia hemisphaericaexon
TCONS_00039371-exon-sc0002086-1491911889:1255..2086TCONS_00039371-exon-sc0002086-1491911889:1255..2086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002086supercontigsc0002086:1255..2776 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21658	1.09397	0.284093	0.683601	2.05752	1.48188	1.5452	1.76961	1.35544	2.47221	2.60267	3.38251	1.00042	1.30113	0.971308	0.913684	1.15798	0.891995	2.90187	2.5971	3.07036	3.5	1.55692	1.97121	0.698915	0.759345	1.93408	3.24082	0.70624	0.984668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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