TCONS_00039364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039364
Unique NameTCONS_00039364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039364 ID=TCONS_00039364|Name=TCONS_00039364|organism=Clytia hemisphaerica|type=transcript|length=383bp
aaatatttcctcaaaaatgaaggtcattattgacatatataaaaaagcac
acataataaagtatacatatatgaATGTATTCAGTGACTACGATGGAGAC
TTGCAATCATTGGATATCATCACACCAAATAGACTGAGACTTGGACGAAA
CAACGACAGAAGTCCAACCGGTGAATTCAGATTGTCAGGAAATTCATCAA
AGATCATTCTACAAAATCAAGCAATCTTCGATTCTTGGTTCGAGCTATGG
TTAACCTCACACGTCCCAGGACTCATCGCCAAGCCAAAGTGGTTCAAATC
AGACACCAGCTTAAAGAAAGGTGACGTTGTTCTATTTACCAAGCAAGATT
CACCGATACGTTCAAATTACCAGTTTGGAATNN
Run BLAST on NCBI

protein sequence of TCONS_00039364-protein

>TCONS_00039364-protein ID=TCONS_00039364-protein|Name=TCONS_00039364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
NISSKMKVIIDIYKKAHIIKYTYMNVFSDYDGDLQSLDIITPNRLRLGRN
NDRSPTGEFRLSGNSSKIILQNQAIFDSWFELWLTSHVPGLIAKPKWFKS
DTSLKKGDVVLFTKQDSPIRSNYQFGX
Run BLAST on NCBI

transcript from alignment at sc0002084:18359..18741

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039364 ID=TCONS_00039364|Name=TCONS_00039364|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at sc0002084:18359..18741 (Clytia hemisphaerica)
NNATTCCAAACTGGTAATTTGAACGTATCGGTGAATCTTGCTTGGTAAAT
AGAACAACGTCACCTTTCTTTAAGCTGGTGTCTGATTTGAACCACTTTGG
CTTGGCGATGAGTCCTGGGACGTGTGAGGTTAACCATAGCTCGAACCAAG
AATCGAAGATTGCTTGATTTTGTAGAATGATCTTTGATGAATTTCCTGAC
AATCTGAATTCACCGGTTGGACTTCTGTCGTTGTTTCGTCCAAGTCTCAG
TCTATTTGGTGTGATGATATCCAATGATTGCAAGTCTCCATCGTAGTCAC
TGAATACATtcatatatgtatactttattatgtgtgcttttttatatatg
tcaataatgaccttcatttttgaggaaatattt

Coding sequence (CDS) from alignment at sc0002084:18359..18741

>TCONS_00039364 ID=TCONS_00039364|Name=TCONS_00039364|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0002084:18359..18741 (Clytia hemisphaerica)
NATTCCAAACTGGTAATTTGAACGTATCGGTGAATCTTGCTTGGTAAATA
GAACAACGTCACCTTTCTTTAAGCTGGTGTCTGATTTGAACCACTTTGGC
TTGGCGATGAGTCCTGGGACGTGTGAGGTTAACCATAGCTCGAACCAAGA
ATCGAAGATTGCTTGATTTTGTAGAATGATCTTTGATGAATTTCCTGACA
ATCTGAATTCACCGGTTGGACTTCTGTCGTTGTTTCGTCCAAGTCTCAGT
CTATTTGGTGTGATGATATCCAATGATTGCAAGTCTCCATCGTAGTCACT
GAATACATtcatatatgtatactttattatgtgtgcttttttatatatgt
caataatgaccttcatttttgaggaaatatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023732XLOC_023732Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039364-proteinTCONS_00039364-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039364-exon-sc0002084-1491911889:18359..18741TCONS_00039364-exon-sc0002084-1491911889:18359..18741Clytia hemisphaericaexon
TCONS_00039364-exon-sc0002084-1510915933:18359..18741TCONS_00039364-exon-sc0002084-1510915933:18359..18741Clytia hemisphaericaexon
TCONS_00039364-exon-sc0002084-1575043694:18359..18741TCONS_00039364-exon-sc0002084-1575043694:18359..18741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002084supercontigsc0002084:18359..18741 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.85453	1.9883	3.92463	1.1293	17.3227	11.2986	3.40781	3.19035	0.515455	1.27695	0.826292	1.62952	0	0.985784	0.231557	0.248496	0.612253	0.156885	0.216745	0.680424	0.985687	0.86541	1.16891	0.637626	1.09457	1.17225	4.47329	3.58051	1.13154	0.461143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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