TCONS_00039356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039356
Unique NameTCONS_00039356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039356 ID=TCONS_00039356|Name=TCONS_00039356|organism=Clytia hemisphaerica|type=transcript|length=550bp
ctaaaaagtgccataatagttacattttatttaaagtttgaagTTAACAG
ATGTTCTATTTTACCTCTGTAAAGACAATGTATGTTTCcctctgttttga
attttgctGTATAGCTAGTACTGCCATTCTGTCGGCTTCCATTCTGGTGT
AGGTCAATCTCCACATCTCTAGTCAGAAGTATTTCCTTTCCGTTTGTTGA
TGTCTGGTCCTCTTCACCTTATCTTGGCTACATCTCTATTGCTCTAGCCA
CCTCAGATATCCATCTTTCGTTTCCATTTATCTGCTCCAGAGTTCTgatg
tttttttcttgttcTGCCTTGAGTTTTTCCTTCCATTCTTCTTGCCTCTG
CCTTCAGCTGTGCAACCAAATGTTGTGCAAATGATAACGTCATCTTATTT
TGTCGTCGTTTACAAAAATAAAGCAGTTTCCTAGATACAAGATGATTTAT
CCCATTTGTACTGGCCGAGGGAAAATAATTTGTGTGGAATAACTTGTTAT
TTAATAGACCGTCGATTTTCTTTTGTGGAAATTCATTTAAGAACTCCAAA
Run BLAST on NCBI

transcript from alignment at sc0002082:20782..21331

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039356 ID=TCONS_00039356|Name=TCONS_00039356|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0002082:20782..21331 (Clytia hemisphaerica)
TTTGGAGTTCTTAAATGAATTTCCACAAAAGAAAATCGACGGTCTATTAA
ATAACAAGTTATTCCACACAAATTATTTTCCCTCGGCCAGTACAAATGGG
ATAAATCATCTTGTATCTAGGAAACTGCTTTATTTTTGTAAACGACGACA
AAATAAGATGACGTTATCATTTGCACAACATTTGGTTGCACAGCTGAAGG
CAGAGGCAAGAAGAATGGAAGGAAAAACTCAAGGCAgaacaagaaaaaaa
catcAGAACTCTGGAGCAGATAAATGGAAACGAAAGATGGATATCTGAGG
TGGCTAGAGCAATAGAGATGTAGCCAAGATAAGGTGAAGAGGACCAGACA
TCAACAAACGGAAAGGAAATACTTCTGACTAGAGATGTGGAGATTGACCT
ACACCAGAATGGAAGCCGACAGAATGGCAGTACTAGCTATACagcaaaat
tcaaaacagaggGAAACATACATTGTCTTTACAGAGGTAAAATAGAACAT
CTGTTAActtcaaactttaaataaaatgtaactattatggcactttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023724XLOC_023724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039356-exon-sc0002082-1491911889:20782..21331TCONS_00039356-exon-sc0002082-1491911889:20782..21331Clytia hemisphaericaexon
TCONS_00039356-exon-sc0002082-1510915933:20782..21331TCONS_00039356-exon-sc0002082-1510915933:20782..21331Clytia hemisphaericaexon
TCONS_00039356-exon-sc0002082-1575043694:20782..21331TCONS_00039356-exon-sc0002082-1575043694:20782..21331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002082supercontigsc0002082:20782..21331 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312121	0.304367	0.471199	0.345746	0.280608	0.22174	0.401281	0.125225	0.263018	0.108597	0.527034	0.207871	0.0691939	0.143717	0.177233	0.380395	0.312411	0.160105	0.110597	0.231464	0.704144	0.441588	0.119291	0.216905	0	0.598156	0	0.15225	0.115477	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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