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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039348 ID=TCONS_00039348|Name=TCONS_00039348|organism=Clytia hemisphaerica|type=transcript|length=522bp
aactaaagaaaatatttaatattcATGGGACACCAGGTACCCTTCAGAGT
GATTGTGGTAAAGAGTTTTACGGAGAGGTGAAAAAGCTTTGCCAAAATGC
CAAGATTAAGAGGATCAGAAGTAGACCATATCACCCACAATCTCAGGGTA
AAGTTGAGCGGACGCATCGGGAGTTAAGAAAGAAAATCAGCTACGACCTG
ATAAGGAGAGGAAAGAAAGGACTCAACTGGGCTAAAGACATCACAAATTA
CATGAAAACCTTAAACAACGAAAAAAGAGAAGAACTGGGATGGCGATCAC
CCTTCGAAGTCTACTATGGAAGAAAATCAAACGAGCTTCTTAAATGTGGA
TTTCTGAAAGATACAGAAGATTGTGTGCCGCATCAAAAGGTAAAAAGCCC
TTCTAGAAGACAGATTCGAGATCACCTTACCGAGGTTAGAAAGACACGGA
AGAAAGCAAAAGAGTGTACGCAGAAAATCAATGAAAGAACAATCAAATAC
CATCGGAAAAAGTATAAATGCG Run BLAST on NCBI protein sequence of TCONS_00039348-protein >TCONS_00039348-protein ID=TCONS_00039348-protein|Name=TCONS_00039348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
LKKIFNIHGTPGTLQSDCGKEFYGEVKKLCQNAKIKRIRSRPYHPQSQGK
VERTHRELRKKISYDLIRRGKKGLNWAKDITNYMKTLNNEKREELGWRSP
FEVYYGRKSNELLKCGFLKDTEDCVPHQKVKSPSRRQIRDHLTEVRKTRK
KAKECTQKINERTIKYHRKKYKC Run BLAST on NCBI transcript from alignment at sc0002080:3866..5463- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039348 ID=TCONS_00039348|Name=TCONS_00039348|organism=Clytia hemisphaerica|type=transcript|length=1598bp|location=Sequence derived from alignment at sc0002080:3866..5463- (Clytia hemisphaerica)
AACTAAAGAAAATATTTAATATTCATGGGACACCAGGTAACTATTGATAA
AAACGACGGTAGGACACTATAAGACTAATTTCATTCTATTTGGAATGATA
CCTCTTTGGCTGTCAGTAGTTCTGCTCTAATTTTTAAATATTAAAGAAGT
CTTAATCACTGAACTCGATCTAGTCTGGCTACTTTACAAACATCAAGTGT
GAAGCATTTTGTTGGTATTTGGAATGAGATTGTCCAACAAACCAAATCAT
AATAACCTATAAAGCTTTTTCCAAAGCTAAGAAGATGGCTTTAGAATTTG
AAATATTTTCGTTTTGAAAAAAGCAATTTACTGAAATCTTTGTTGGATAA
AGAGTTTGCGCATCTAAAGGTCTACTTGTCTTTATAGATTTTGATTGACG
ACGCCCAAAATAGTCATCCCCTACAACGTTTTTTTGACTTCAATATTATT
TTTTGCTGAATTGTTGTTCTAATTGCCAGTCTAACTTCGAAACAATCATA
AAATGTTGTCTTTGTATTTCATTCCAGGTACCCTTCAGAGTGATTGTGGT
AAAGAGTTTTACGGAGAGGTGAAAAAGCTTTGCCAAAATGCCAAGATTAA
GAGGATCANGGGACACCAGGTAACTATTGATAAAAACGACGGTAGGACAC
TATAAGACTAATTTCATTCTATTTGGAATGATACCTCTTTGGCTGTCAGT
AGTTCTGCTCTAATTTTTAAATATTAAAGAAGTCTTAATCACTGAACTCG
ATCTAGTCTGGCTACTTTACAAACATCAAGTGTGAAGCATTTTGTTGGTA
TTTGGAATGAGATTGTCCAACAAACCAAATCATAATAACCTATAAAGCTT
TTTCCAAAGCTAAGAAGAATGGCTTTAGAATTTGAAATATTTTCGTTTTG
AAAAATAGCAATTTACTGAAATCTTTGTTGGATAAAGAGTTTGCGCATCT
AAAGGTCTATTTGTCTTTATAGATTTTGATTGACAACGCCCAAAATAGTC
ATCCCCTACAGCGTTTTTTTGACTTCAATATTATTTTTTGCTGAATTGTT
GTTCTAATTGCCAGTCTAACTTCGAAACAATAATAAAATGTTGTCTTTGT
ATTTTATTCCAGGTACCCTTCAGAGTGATTGTGGTAAAGAGTTTTACGGA
GAGGTGAAAAAGCTTTGCCAAAATGCCAAGATTAAGAGGATCAGAAGTAG
ACCATATCACCCACAATCTCAGGGTAAAGTTGAGCGGACGCATCGGGAGT
TAAGAAAGAAAATCAGCTACGACCTGATAAGGAGAGGAAAGAAAGGACTC
AACTGGGCTAAAGACATCACAAATTACATGAAAACCTTAAACAACGAAAA
AAGAGAAGAACTGGGATGGCGATCACCCTTCGAAGTCTACTATGGAAGAA
AATCAAACGAGCTTCTTAAATGTGGATTTCTGAAAGATACAGAAGATTGT
GTGCCGCATCAAAAGGTAAAAAGCCCTTCTAGAAGACAGATTCGAGATCA
CCTTACCGAGGTTAGAAAGACACGGAAGAAAGCAAAAGAGTGTACGCAGA
AAATCAATGAAAGAACAATCAAATACCATCGGAAAAAGTATAAATGCG Coding sequence (CDS) from alignment at sc0002080:3866..5463- >TCONS_00039348 ID=TCONS_00039348|Name=TCONS_00039348|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0002080:3866..5463- (Clytia hemisphaerica)
GTACCCTTCAGAGTGATTGTGGTAAAGAGTTTTACGGAGAGGTGAAAAAG
CTTTGCCAAAATGCCAAGATTAAGAGGATCAGAAGTAGACCATATCACCC
ACAATCTCAGGGTAAAGTTGAGCGGACGCATCGGGAGTTAAGAAAGAAAA
TCAGCTACGACCTGATAAGGAGAGGAAAGAAAGGACTCAACTGGGCTAAA
GACATCACAAATTACATGAAAACCTTAAACAACGAAAAAAGAGAAGAACT
GGGATGGCGATCACCCTTCGAAGTCTACTATGGAAGAAAATCAAACGAGC
TTCTTAAATGTGGATTTCTGAAAGATACAGAAGATTGTGTGCCGCATCAA
AAGGTAAAAAGCCCTTCTAGAAGACAGATTCGAGATCACCTTACCGAGGT
TAGAAAGACACGGAAGAAAGCAAAAGAGTGTACGCAGAAAATCAATGAAA
GAACAATCAAATACCATCGGAAAAAGTATAAATGCCTAAAGAAAATATTT
AATATTCATGGGACACCAGGTACCCTTCAGAGTGATTGTGGTAAAGAGTT
TTACGGAGAGGTGAAAAAGCTTTGCCAAAATGCCAAGATTAAGAGGATCA
GAAGTAGACCATATCACCCACAATCTCAGGGTAAAGTTGAGCGGACGCAT
CGGGAGTTAAGAAAGAAAATCAGCTACGACCTGATAAGGAGAGGAAAGAA
AGGACTCAACTGGGCTAAAGACATCACAAATTACATGAAAACCTTAAACA
ACGAAAAAAGAGAAGAACTGGGATGGCGATCACCCTTCGAAGTCTACTAT
GGAAGAAAATCAAACGAGCTTCTTAAATGTGGATTTCTGAAAGATACAGA
AGATTGTGTGCCGCATCAAAAGGTAAAAAGCCCTTCTAGAAGACAGATTC
GAGATCACCTTACCGAGGTTAGAAAGACACGGAAGAAAGCAAAAGAGTGT
ACGCAGAAAATCAATGAAAGAACAATCAAATACCATCGGAAAAAGTATAA
ATGCCTAAAGAAAATATTTAATATTCATGGGACACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039348-exon-sc0002080-1575043694:5428..5463 | TCONS_00039348-exon-sc0002080-1575043694:5428..5463 | Clytia hemisphaerica | exon |
| TCONS_00039348-exon-sc0002080-1575043694:3866..4351 | TCONS_00039348-exon-sc0002080-1575043694:3866..4351 | Clytia hemisphaerica | exon |
| TCONS_00039348-exon-sc0002080-1510915933:5428..5463 | TCONS_00039348-exon-sc0002080-1510915933:5428..5463 | Clytia hemisphaerica | exon |
| TCONS_00039348-exon-sc0002080-1510915933:3866..4351 | TCONS_00039348-exon-sc0002080-1510915933:3866..4351 | Clytia hemisphaerica | exon |
| TCONS_00039348-exon-sc0002080-1491911889:5428..5463 | TCONS_00039348-exon-sc0002080-1491911889:5428..5463 | Clytia hemisphaerica | exon |
| TCONS_00039348-exon-sc0002080-1491911889:3866..4351 | TCONS_00039348-exon-sc0002080-1491911889:3866..4351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002080 | supercontig | sc0002080:3866..5463 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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