TCONS_00039331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039331
Unique NameTCONS_00039331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039331 ID=TCONS_00039331|Name=TCONS_00039331|organism=Clytia hemisphaerica|type=transcript|length=584bp
TACCAACATGAGTAGTGCTACTCGTAATCCTTCTTTGGAGCATGTTGGGC
TATCTGTACGGAAGTCTTGGATTTCCTCAAAGCCCCTAGCGACGAGTCTT
GCCTTCACTGATGGTTGACCATTGATGACTTTTGGGGTAATAACCCATCT
AAGGGACATTACACTTGGTCCAGTATTTTCAACTTCAAGATAAACATCTT
GGGACTTCCAAGAAGTCAGTTCTTTTTCTTTAGCATTTAACACCTCATTG
TCATTACTCTGAAATAAGTTTGTTGAGATTGATGTTTCACTATCGTCGTC
GTCTTCAATCTCGATGTCCTTGATGCTTTTGAAATTGACTGATTTCTTGG
CTCCATCCGCAGTTTCAATGTTGAACCATCCGTCGTGCTTACCACCGACC
TTCCCAGCTCTTGATAGTATTTTTGCATTGACCCATtcgttgtttttatt
ttggaagCGAATATTGATCTTAGGTTTTATCTTTACAGGGATCTGTGATG
GTTTTCTTTGGGCAACCTTTCTGGTATGGCTGTTTGATTGTATTCTATTT
GTCTCATCATTGGTTGGCGTGATTTGTGGTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00039331-protein

>TCONS_00039331-protein ID=TCONS_00039331-protein|Name=TCONS_00039331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
QPQITPTNDETNRIQSNSHTRKVAQRKPSQIPVKIKPKINIRFQNKNNEW
VNAKILSRAGKVGGKHDGWFNIETADGAKKSVNFKSIKDIEIEDDDDSET
SISTNLFQSNDNEVLNAKEKELTSWKSQDVYLEVENTGPSVMSLRWVITP
KVINGQPSVKARLVARGFEEIQDFRTDSPTCSKEGLRVALLMLV
Run BLAST on NCBI

transcript from alignment at sc0002077:20627..21210

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039331 ID=TCONS_00039331|Name=TCONS_00039331|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at sc0002077:20627..21210 (Clytia hemisphaerica)
CACAACCACAAATCACGCCAACCAATGATGAGACAAATAGAATACAATCA
AACAGCCATACCAGAAAGGTTGCCCAAAGAAAACCATCACAGATCCCTGT
AAAGATAAAACCTAAGATCAATATTCGcttccaaaataaaaacaacgaAT
GGGTCAATGCAAAAATACTATCAAGAGCTGGGAAGGTCGGTGGTAAGCAC
GACGGATGGTTCAACATTGAAACTGCGGATGGAGCCAAGAAATCAGTCAA
TTTCAAAAGCATCAAGGACATCGAGATTGAAGACGACGACGATAGTGAAA
CATCAATCTCAACAAACTTATTTCAGAGTAATGACAATGAGGTGTTAAAT
GCTAAAGAAAAAGAACTGACTTCTTGGAAGTCCCAAGATGTTTATCTTGA
AGTTGAAAATACTGGACCAAGTGTAATGTCCCTTAGATGGGTTATTACCC
CAAAAGTCATCAATGGTCAACCATCAGTGAAGGCAAGACTCGTCGCTAGG
GGCTTTGAGGAAATCCAAGACTTCCGTACAGATAGCCCAACATGCTCCAA
AGAAGGATTACGAGTAGCACTACTCATGTTGGTA

Coding sequence (CDS) from alignment at sc0002077:20627..21210

>TCONS_00039331 ID=TCONS_00039331|Name=TCONS_00039331|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0002077:20627..21210 (Clytia hemisphaerica)
CAACCACAAATCACGCCAACCAATGATGAGACAAATAGAATACAATCAAA
CAGCCATACCAGAAAGGTTGCCCAAAGAAAACCATCACAGATCCCTGTAA
AGATAAAACCTAAGATCAATATTCGcttccaaaataaaaacaacgaATGG
GTCAATGCAAAAATACTATCAAGAGCTGGGAAGGTCGGTGGTAAGCACGA
CGGATGGTTCAACATTGAAACTGCGGATGGAGCCAAGAAATCAGTCAATT
TCAAAAGCATCAAGGACATCGAGATTGAAGACGACGACGATAGTGAAACA
TCAATCTCAACAAACTTATTTCAGAGTAATGACAATGAGGTGTTAAATGC
TAAAGAAAAAGAACTGACTTCTTGGAAGTCCCAAGATGTTTATCTTGAAG
TTGAAAATACTGGACCAAGTGTAATGTCCCTTAGATGGGTTATTACCCCA
AAAGTCATCAATGGTCAACCATCAGTGAAGGCAAGACTCGTCGCTAGGGG
CTTTGAGGAAATCCAAGACTTCCGTACAGATAGCCCAACATGCTCCAAAG
AAGGATTACGAGTAGCACTACTCATGTTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023705XLOC_023705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039331-exon-sc0002077-1491911889:20627..21210TCONS_00039331-exon-sc0002077-1491911889:20627..21210Clytia hemisphaericaexon
TCONS_00039331-exon-sc0002077-1510915933:20627..21210TCONS_00039331-exon-sc0002077-1510915933:20627..21210Clytia hemisphaericaexon
TCONS_00039331-exon-sc0002077-1575043694:20627..21210TCONS_00039331-exon-sc0002077-1575043694:20627..21210Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039331-proteinTCONS_00039331-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002077supercontigsc0002077:20627..21210 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326431	0.165936	0.210582	0	0.810933	0.590864	1.71129	1.35339	0.51776	0.254623	0.331441	0.300376	2.11611	0.532464	0.845989	0.707558	0.529599	1.07141	1.38483	1.74657	1.63574	1.08961	0.457587	0.674686	0.131277	0.622819	1.54519	1.97495	0.219574	0.686444
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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