TCONS_00039322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039322
Unique NameTCONS_00039322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039322 ID=TCONS_00039322|Name=TCONS_00039322|organism=Clytia hemisphaerica|type=transcript|length=742bp
AAATGAACCTTTACAGTGCGCATGACACTACATTGAATGCTCTACTCATG
GCCTTTGGAAAATGGGACCGTTATTCTTGACCCAGATTTGCTTCTTATAT
TGCATTCGAACTTTACAAGCATAAAGAGGACGATAAACATTACGTGAGAG
TTgtatataataaaaaatcattattGTTGGACCAAGAATCCAATGCTGAA
TATATTCCACTTGAAAGGTTTTTCGAGTTGTTGAAGAAATATCGCGTTAA
AGACTGGAAAACATATTGTCAGAGAAAATAGGCTCGAAAACCCTCCGCGT
CCAATATCCCACTTCCTTCGTGCTGTAGTTTGTCTTAGTGCCTACTTTTC
TAAGTAAGAATGGATTCAGTTCGCTCACCCACACATGATGCGACGACGTA
CACATTAGAACAAGTGCAATTTGTGAGCCGTCATGGCGCTCGTACCACGG
TCACGAATATTCCAGACGTTCACGACTTCCCTCATATGGAGCCGGCTGAT
TGGAGTGGATTCGAAGTCAAAACAAGCCTACCCCATATTTTGAAACTTGA
CAATGGAAAAGAACTTCTTCAATCAGCTTACGATAAAACTATGGAAAGTC
GTGGCTTGCAGGGAGGAATGAAAGTGGGTGAATTGACACGAATTGGTCGT
AAACAAGCGCTGCAGTTGGGAAATATGTTAAAGAAAAGATATCAAGAGAA
AAATTCCTTTTTGTCCGATGTCTTCAAATCGAATGATATCAG
Run BLAST on NCBI

transcript from alignment at sc0002074:1660..11621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039322 ID=TCONS_00039322|Name=TCONS_00039322|organism=Clytia hemisphaerica|type=transcript|length=9962bp|location=Sequence derived from alignment at sc0002074:1660..11621+ (Clytia hemisphaerica)
AAATGAACCTTTACAGTGCGCATGACACTACATTGAATGCTCTACTCATG
GCCTTTGGAAAATGGGACCGTTATTCTTGACCCAGATTTGCTTCTTATAT
TGCATTCGAACTTTACAAGCATAAAGAGGTTTGAaggcttttttcttttt
cttgtttgacATTATAATTAATCATAGCTAGCAAGCTAGTGGCTAGTTAT
AGATGACgtttttaagtttatttttgtaactttGGCCGTTCTCAAACTTC
ATATCAACGTCAATTTATTCGACGAAGACTTGCCTTTATTCGATTGACCT
GACCTGACCGACCTCTAATgcaaatatttttatgattttagtaGGTTAAA
GTTCTGATAAGTTAAGGTCAAAACATTTCTTCAAAATCACAGTGTGCTTT
AGAGGGTTCGTTATTacttacagtatatggccccaaaaacggagacggcc
cccaaaacggaggttttcattaaaatgaagattctgacttgtagatttat
cagaattaaacgatttttgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNcactctagctccttggatattgaaaataagttatgaaaacg
gggtataggaacctttctacacctaatgccgttcagaaaatgcagataca
tctgtgactttagaagctgggtaaaagatatagcatcttgaaggtcaacc
agtattttgggaccctagaatcagcattgataaaaccgaaagtaaatatG
AGAgcctaaatatgagaaacagcaaaaaatattggaattccattcctatc
accttgagttaatagtttataacaaaaaattaacattatatataaatttt
ttcgCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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aaaaatatctttaaagcttaatattttcagtttcagttaagctttttttc
taaaattttcacagcttattccatacataaatggaactattttcaaaaaa
gatttcttttcaaaaacttgattaagaggTTGTTAAATCGAAatggtcat
tttgaaaatttctaaattttcagtttggactttgcaatatcgaaagtctt
gaaatatttcattaaaatcataaattttacatccatcgggtcgtaaattt
aaggggaaacacaaatatgttcatagtttttctcCCTATTACCACTgcgc
ttaataatttgattttaactgcacctccgttttgggggccccaaacctgt
attttgacaaccaggggtatactgtaacattttatcaaacaaatttatgc
ccaaaaccctttaaatcacatttccaaactatggtcaaagttttgtattc
atatcttaaagatatctcgagaaatcgctaaaattgcaaacctccgtttt
gggggccattagaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNtgttaaagtttttcatgcagcaaaaatct
ttgtaaaaccttttttcctctagatttgagagaaattttaaatttgatcg
ccgttttgggggccacatactgtattcATTTTTCTACAATtgattgaata
tttttgaaaaatgaatcaaaaacaTGATTTCCAAATCCTATCCTCAATTG
AATCGTATTCAAACATGATACCTTCTTTTACGTGAAAAGGTGTTattgtt
gaaataaaaaagttagaaaGATGAGNATGATACCTTCTTTTACGTGAAAA
GGTGTTATTGTTGAAATAGAAAAGATAGAAAGATGATTATTTCCTTGACA
TTAAAGGTCATAAAAAAATGAACCTGTAAGTACCTTGATTCTCACGAGAA
ACTGTcattgaaaagttgaaattaaAATTCGATATCTTTACGTCAAAGTT
TTATAATCTTTCTTGTGTTTTTAGGACGATAAACATTACGTGAGAGTTgt
atataataaaaaatcattattGTTGGACCAAGAATCCAATGCTGAATATA
TTCCACTTGAAAGGTACTTCTAAATTTTCTATTCACCATTTTGTTATTAT
TTCGAAATTATTATAATTacttttcttgcttttttttcgaaagaggAAGC
AAAATTTATTAATATGTAATTCGTTTTCATTGCTTGTGATTCCTTTCGAT
AATGAAGCAAAACATTACAAAAAGGACGACTATCACTTGTTTCAGGTTTT
TCGAGTTGTTGAAGAAATATCGCGTTAAAGACTGGAAAACATATTGTCAG
AGAAAATAGGCTCGAAAACCCTCCGCGTCCAATATCCCACTTCCTTCGTG
CTGTAGGTATAACCGCATATCCACTAGTTTTTTGCTTCACGCTGCTATTT
TTATAGggtaattgattttttttaatcgcACTAATTATTATTTTCACCAA
AAATGCTTGTatatttttaattacttttaaaCGGGTAATTTAAGAATTGC
TATTTTCACTTAATTAATTTGATTCGAATGATATTGTTACAAATTTTGAA
CTAACAGTTTGTGATGCCATTGCTTAAATTCATTTAATTAACCGTATTGT
TAAGTCGTTCGACCTTTTAAAAATTCGTTTGGTAGTAGAAGagccattat
ttttttctggctgTGTCTAAGTTTCAATTAGATAAAGCACTAATAAACAC
ATTTTATTTAGGATTGCTTTTTGGGAGAATAATTTCTCAGTTTGTCTTAG
TGCCTACTTTTCTAAGTAAGAATGGATTCAGTTCGCTCACCCACACATGA
TGCGACGACGTACACATTAGAACAAGTGCAATTTGTGAGCCGTCATGGCG
CTCGTACCACGGTCACGAATATTCCAGACGTTCACGACTTCCCTCATATG
GAGCCGGCTGATTGGAGTGGATTCGAAGTCAAAACAAGCCTACCCCATAT
TTTGAAACTTGACAATGGAAAAGAACTTCTTCAATCAGCTTACGATAAAA
CTATGGAAAGTCGTGGCTTGCAGGTGAGTTTCACATCGTATTTTTGACAT
CGTGTTTGTTTAAGATATGTGANAAAAGTCGTGGCTTGCTGCAGGTGAGT
TTCACATCGTATTTTTGACATCGTGTTTGGTTAAAGATATGTGATGCTCG
CTGTTATCGATTCGAAGCTTTATTgacatttttgataaaaaggaTTCtcc
ttaaatatttttttcattatctGAATCTTTGCATGTGTAGTTTGAATCGA
TTCAATTCAAGTCAAGAGGAAATCCTCATACCATTACCCTCCGTGAcatg
ccccccccccacttatttggggggggggggggaaNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNCCCCCCACTTCGTGAGAGAAACTTGCCTCTAC
TTTGTTTAATTTGAGATGATACTTTGATAGTTGTGTGGAAAATTCAACGT
TGAGCACTGTGAAGTCATGTTCATAATCCTTATCTTTTCTTTTCGATCAG
TATACGAAGTTCGAACATCGAGCGAACCATTTTGACCGCTCTCTTCATCA
TCGAAGGTTTGTTTGGCAAAGAAAACATACAAGGTAAGTTTATATTCTAA
TACAATTATTTTGAACCATGGTTCCGGTTTGTGGGTCCTGTGAAGATAAA
AATCTGGACTCTTTAAACTCTCTATGGACTGTATTCGGTTGTCTATGTTA
GTTTTGTAGCAATCTCAATTCGACCTTATTGTGAGGTTTCCTTTCTTTAG
GAGAACCTTTGGAAATCGAAGTTAAGGAGCGAGATAATGAAACGATGTAT
CCGAACTGGTACGCCTGTGAAGCCTTGAAAGAGTGGAAGAGCACTATCAA
CTATTTAAACTTCACTCCTGACATTGCGTCATTTACAAAAGAATGCAATG
CACTGATTGGCTGTGAGTCAGATCCCATTCATATGGTAGCTCTTGATGAC
ATTATCAAATGTAGAAAGGTAAACTTCAGTTTTCTTTACAACACAGATAA
AGAATAGTTACAAGCTTCTCTAAGGTGCCGCATACATCCCCATCCCGGTT
ATCATAAGCTGAATAGCATGTTTTCAGCTTATAATTACTTTGCTTAGAGT
TTTAGAGGTACAATTTCGGACCCCTTTTTTATTCGGAAACCCCCTACTGT
TTGGGACCTTAGAGTACTCTCAATAAACTCGAACATCGAGAGAGAGCCAC
TAGTAGTAATCGTTAAATGTTTTTGGGAAGATGTTCATTGTTCGACGTTC
CTCTTTCATCCATTATCATGATTTCATTACTGGGCTTCGTTGTTTTAGAG
TCATGGGTTCCGTCTTCCAAAAGAGTTGCACGGTTATGAAGAAATGATCG
GTGAAGAAGCTGctgaaactttcaaaacaatctTGGAAGGGGAAAACAGG
TACAAACTTTCAGCCCACTTTGGACTTATTTTTGAATTAACAAGTACATC
CTCTTGATCGGAGCATTATTCCCATTCGACCAGGACCATCTCCGTGGCTG
CTACTATTCAGAGAGTCATAACAAGTTCACCAGAAGGCCTAATTTTCTGT
TACTTTTTCAGATCTGTTGGTCTCAAGCGATCTATCGGATGTCTTTTGAA
CGAACTGTGTGAAAATATGGAAAAAGTGGTCAAAGGATGCAGGTATACTT
TATAAATCcctttatttttaaattgcATTACCTTTTATCTTTAGCTCTAG
GGACTTTGATTGATACAAATAGGTCTATTTTATTGATGACGGCAAATATT
TTGCTTTAGAAGGAAGTACTCGGAAAATACACTTGATCTCTATGGTTTCT
TTTTGTCATGTTTGTTTGACCAGAGAAAAAAACCACAGATAAAAAATAAC
TGTCAAAATGAATAACTGTCAAAATGANNNNNNNNNNNNNNNNNNNNNNN
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tttggggggggggtgtaAATCTAAAATCGGCCTAAAAGTGGGTGGGAGCT
GTCTCATTTTTAAAACTCAGAGGGGGcccaaaaaagtgggggggacCTGA
AGGGCTGCACTAAAGTTCTAGGGGCTAATTACAATaattaagaaattgta
aaaatatttttttgttttattgaaatCGAAATAATTTGGTgccaaattat
ttttctttgctgggacctgaaccttgaaAGTACTTTTTGCAGGGACCTGA
ACCTTTAGATTTCAATTGGGACTTTCAACCTTACTGAAAgttggggggac
ttaaaacttaggggggacctaagtttgttggggggacctagaaccccatt
cggagccatgGTGATTCGAGCAAAtgaaatttcgatctttccgtggtaaa
aaagatgaaattttcttatttctccGACCTTTAGTGGGATTGATattaga
tttttctgatttttccgacccttagcgggactttagaaatccaaaaaagg
tacctttaagggcggcacataccgtaccctccatttgtcTAAGTACCCCC
GGGAAAATTTCATGTTTGGGCTCGAATTAACAACATTTGCTATGTGCACT
TTTAGAGAAAGCGATGTTCTCTCCTTCCCGTGTATACCACAGTATAATTT
GATAAATAATCACAAGTTTTTTTATTCTTAGGGAGGAATGAAAGTGGGTG
AATTGACACGAATTGGTCGTAAACAAGCGCTGCAGTTGGGAAATATGTTA
AAGAAAAGATATCAAGAGAAAAATTCCTTTTTGTCCGATGTCTTCAAATC
GAATGATATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023699XLOC_023699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039322-exon-sc0002074-1491911889:1660..1787TCONS_00039322-exon-sc0002074-1491911889:1660..1787Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1510915933:1660..1787TCONS_00039322-exon-sc0002074-1510915933:1660..1787Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1575043694:1660..1787TCONS_00039322-exon-sc0002074-1575043694:1660..1787Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1491911889:4184..4272TCONS_00039322-exon-sc0002074-1491911889:4184..4272Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1510915933:4184..4272TCONS_00039322-exon-sc0002074-1510915933:4184..4272Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1575043694:4184..4272TCONS_00039322-exon-sc0002074-1575043694:4184..4272Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1491911889:4455..4565TCONS_00039322-exon-sc0002074-1491911889:4455..4565Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1510915933:4455..4565TCONS_00039322-exon-sc0002074-1510915933:4455..4565Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1575043694:4455..4565TCONS_00039322-exon-sc0002074-1575043694:4455..4565Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1491911889:4950..5232TCONS_00039322-exon-sc0002074-1491911889:4950..5232Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1510915933:4950..5232TCONS_00039322-exon-sc0002074-1510915933:4950..5232Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1575043694:4950..5232TCONS_00039322-exon-sc0002074-1575043694:4950..5232Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1491911889:11491..11621TCONS_00039322-exon-sc0002074-1491911889:11491..11621Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1510915933:11491..11621TCONS_00039322-exon-sc0002074-1510915933:11491..11621Clytia hemisphaericaexon
TCONS_00039322-exon-sc0002074-1575043694:11491..11621TCONS_00039322-exon-sc0002074-1575043694:11491..11621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002074supercontigsc0002074:1660..11621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.751839	0	0	1.02981	2.72882	0	1.18699	1.8359	2.43493	2.76579	1.82315	0	2.64152	0	0	0.000472509	1.36151	2.43803	2.92144e-08	2.8928	5.26731	1.93436
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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