TCONS_00039317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039317
Unique NameTCONS_00039317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039317 ID=TCONS_00039317|Name=TCONS_00039317|organism=Clytia hemisphaerica|type=transcript|length=296bp
AAGTAAGGCAAGAGAGCTTGGatgttttttatctaaaaagtttgaaaaac
caATACTTCGATTAAGTGTGTAGTAGTACTTTTAAACAGCCTTCTCAATA
AAAACGTGCATCAGGTACTCCTCATGGCTTCAGATAAGGTTTGCATTCTC
ACTGATCAAGACGAATTAGGTGAAGAGAATCTTGAGGATGATCAGaacag
agatttgggaaaagaggataagaaacgccgctgccgctcgctgttttcct
attctttccctttgaattcggcaccctttgaagaagcaagGCTGTA
Run BLAST on NCBI

transcript from alignment at sc0002072:14616..14911

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039317 ID=TCONS_00039317|Name=TCONS_00039317|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at sc0002072:14616..14911 (Clytia hemisphaerica)
TACAGCcttgcttcttcaaagggtgccgaattcaaagggaaagaatagga
aaacagcgagcggcagcggcgtttcttatcctcttttcccaaatctctgt
tCTGATCATCCTCAAGATTCTCTTCACCTAATTCGTCTTGATCAGTGAGA
ATGCAAACCTTATCTGAAGCCATGAGGAGTACCTGATGCACGTTTTTATT
GAGAAGGCTGTTTAAAAGTACTACTACACACTTAATCGAAGTATtggttt
ttcaaactttttagataaaaaacatCCAAGCTCTCTTGCCTTACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023697XLOC_023697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039317-exon-sc0002072-1491911889:14616..14911TCONS_00039317-exon-sc0002072-1491911889:14616..14911Clytia hemisphaericaexon
TCONS_00039317-exon-sc0002072-1510915933:14616..14911TCONS_00039317-exon-sc0002072-1510915933:14616..14911Clytia hemisphaericaexon
TCONS_00039317-exon-sc0002072-1575043694:14616..14911TCONS_00039317-exon-sc0002072-1575043694:14616..14911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002072supercontigsc0002072:14616..14911 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.463309	0	0.485524	0	0	0	0	1.89389	2.20954	2.0968	3.77206	1.94877	2.03996	3.36968	3.33915	5.74186	2.1194	1.96261	8.34182	5.19759	1.2734	0.749112	0	0.87997	2.84402	1.75107	0	0	1.42639	3.9214
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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