TCONS_00039309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039309
Unique NameTCONS_00039309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039309 ID=TCONS_00039309|Name=TCONS_00039309|organism=Clytia hemisphaerica|type=transcript|length=438bp
AAGTTTGATGCTCAAagttccaaaaaaataagaacagcgaGTCTCATCAA
AAGTTTACTGGTTCTTAATAAAGAAAGAATATGTAGTTCATTGCACGGAC
CTGCTTTTAGGTCAAATCTTTTAGGAAGCTTTGTGATCTTCAACGTTGCT
ACATTGCTTAACTAGGTCTGTTTCtttttagtaaataaaaaaacagaatA
TCGACCAGAATTGATAGGTGGATTTTAGGaataattttttgcacataTAC
ATGCgttattttttaatataaaaatttttgttttctttttcttcaacatC
AATATCattaaattataattatttGTATATTAAAAATGATGACAATGAAC
ATTATTTTGTCTCCAACTGTAAAAttgatgataattttttttggtaaaat
aatgAATTGGAAAAAAACACAGAATAAtggaaatcaaa
Run BLAST on NCBI

transcript from alignment at sc0002071:948..1385

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039309 ID=TCONS_00039309|Name=TCONS_00039309|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at sc0002071:948..1385 (Clytia hemisphaerica)
tttgatttccaTTATTCTGTGTTTTTTTCCAATTcattattttaccaaaa
aaaattatcatcaaTTTTACAGTTGGAGACAAAATAATGTTCATTGTCAT
CATTTTTAATATACaaataattataatttaatGATATTGatgttgaagaa
aaagaaaacaaaaatttttatattaaaaaataacGCATGTAtatgtgcaa
aaaattattCCTAAAATCCACCTATCAATTCTGGTCGATattctgttttt
ttatttactaaaaaGAAACAGACCTAGTTAAGCAATGTAGCAACGTTGAA
GATCACAAAGCTTCCTAAAAGATTTGACCTAAAAGCAGGTCCGTGCAATG
AACTACATATTCTTTCTTTATTAAGAACCAGTAAACTTTTGATGAGACtc
gctgttcttatttttttggaactTTGAGCATCAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023689XLOC_023689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039309-exon-sc0002071-1491911889:948..1385TCONS_00039309-exon-sc0002071-1491911889:948..1385Clytia hemisphaericaexon
TCONS_00039309-exon-sc0002071-1510915933:948..1385TCONS_00039309-exon-sc0002071-1510915933:948..1385Clytia hemisphaericaexon
TCONS_00039309-exon-sc0002071-1575043694:948..1385TCONS_00039309-exon-sc0002071-1575043694:948..1385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002071supercontigsc0002071:948..1385 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.309849	0.151076	0.175414	0	1.63707	0	0.710547	1.08531	1.16907	0.447239	0.575101	1.0534	1.72192	1.30644	1.29105	0.586126	0.74338	0.900475	1.15746	2.58544	1.79799	3.20142	3.42174	0.95787	0	0.366516	2.77206	1.94871	2.66865	1.08339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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