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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039306 ID=TCONS_00039306|Name=TCONS_00039306|organism=Clytia hemisphaerica|type=transcript|length=1675bp
AAAATTACCGccaccaccacctccaccacgtAAAAATGTTATTATATTTG
GAGGAAAAAAACCCTTATCTTCAATTCCCAACCAAACACCAGTCATTGGT
AACCCTAAACCATTTTCTTTATTTGTCGGAGGATTCCATCCACAACTACA
AATTACAGACATTAAGGAAACAATCGAAAAGGATGTAGGaattaaagtaa
ttaaaatcGAACTCAATAAAGAAAACCAGTACAATAAGTCGGTCAAAGTG
GACATCAACATCAGAGACAAAAACAAAGCTTTAGAGGAGAAAACCTGGTT
TGAAGGTCTTATTGTTAAGCCATATCGTCACAGGAGAACACCCAGAAACA
TGGACAACCACCCAGAACGACAATATCAGCAATCAGAGGATAATCATCAT
AAACGAACAAATCATTACAACCAGCAAACCAGATTGAGGCGAAACACTCA
TGATGTAAACCATTGGGACTCACTTAATGATGGAAGGTGGTAGAAAGGAT
ACAACCACTACAGACAAAATTAAATTTATAGCTTTAAACTGTAGTGGATA
TAAAGCTAACAGTGCATACGTTGACTCTCTAACAAATACCTATGATTGTC
TCTTCCTGAATGAACTCTGGATAACAAAAACAGAAGAGCACCTCTTAAAT
CATTACAAAAACAAATTTAAAACAATATTTCAACCAGCGAAGAAAAGTAA
CACTGGTCGTCCGTCTGGTGGAACTGTTCTTCTACTGAGCAAACAAGCAT
TCCACAACACAGTCACCATCATACAAGAAGATTTCCTAACCACTGTCAAG
CTTTCATCAACAACACTCAAATTCTTATCTCCGGAGTATATCTTCAATCA
ACCTCAGAACACAGAATGTACAGATATCTACAGATCCCAATTAGCCACAC
TCACCGGTATTACCGAACAATTTTCAGAATCATGTGAAACAATCATCCTC
GGTGACTTTCAATCATATCCAAAAGTACAAAAAACAACAAGATTTGCTCA
GCAAAATAGACTCTCTAAATACCTCATTGAATTTATTGAAGATAATGAAC
TAAATCCAATAGACATAACTAAAGGCGAAGGTCCCACCTACACGTATCAT
CACATATCGCTACCAAACAGATCTTACATTGACAATATCCTAACCTCGAA
CGAGCTTACGTCGAATGCATATGAAACCAAAGTGTTAGAACCCTCAGCAT
CCAACACCAGTGATCACCTACCGGTAACCACAACTCTCAATATTCAGTGT
TCAGTTCCTGCACAACAATCAACAAACCCAAACGAATCAAACCAACAATT
TCAACTACCCAATTATATATGGCACAATAATCACTTCATTTCTATATACC
AAAATAAAGTTACCACCGCTATTCAACAACTAGAAGCTACAAATGACGTT
GAAACAGACTTAACAAACTTAAATGAACTCCTCTTACAGTGCTCCTCTGA
CAGCTATGCCAACCTGAAAAACAATAAGTTTCATTTCCAACCAAAGAAAT
AGTGGAACAAAGACCTCGCtgaggcaaaaaaaaaattgaatcaaatGTTC
AATCCATGGAGAGATCAAGGATTCCCCCGCTCGCAGGACAATGTGACATA
CCAGAGATATATCTTCGCCAGAAAAAGATTTCGGAATATGGTAAAGCGTG
CAAAAAATCAAGCCAACGTTGACCA Run BLAST on NCBI protein sequence of TCONS_00039306-protein >TCONS_00039306-protein ID=TCONS_00039306-protein|Name=TCONS_00039306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MMEGGRKDTTTTDKIKFIALNCSGYKANSAYVDSLTNTYDCLFLNELWIT
KTEEHLLNHYKNKFKTIFQPAKKSNTGRPSGGTVLLLSKQAFHNTVTIIQ
EDFLTTVKLSSTTLKFLSPEYIFNQPQNTECTDIYRSQLATLTGITEQFS
ESCETIILGDFQSYPKVQKTTRFAQQNRLSKYLIEFIEDNELNPIDITKG
EGPTYTYHHISLPNRSYIDNILTSNELTSNAYETKVLEPSASNTSDHLPV
TTTLNIQCSVPAQQSTNPNESNQQFQLPNYIWHNNHFISIYQNKVTTAIQ
QLEATNDVETDLTNLNELLLQCSSDSYANLKNNKFHFQPKK Run BLAST on NCBI transcript from alignment at sc0002070:26796..28470 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039306 ID=TCONS_00039306|Name=TCONS_00039306|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at sc0002070:26796..28470 (Clytia hemisphaerica)
TGGTCAACGTTGGCTTGATTTTTTGCACGCTTTACCATATTCCGAAATCT
TTTTCTGGCGAAGATATATCTCTGGTATGTCACATTGTCCTGCGAGCGGG
GGAATCCTTGATCTCTCCATGGATTGAACatttgattcaatttttttttt
gcctcaGCGAGGTCTTTGTTCCACTATTTCTTTGGTTGGAAATGAAACTT
ATTGTTTTTCAGGTTGGCATAGCTGTCAGAGGAGCACTGTAAGAGGAGTT
CATTTAAGTTTGTTAAGTCTGTTTCAACGTCATTTGTAGCTTCTAGTTGT
TGAATAGCGGTGGTAACTTTATTTTGGTATATAGAAATGAAGTGATTATT
GTGCCATATATAATTGGGTAGTTGAAATTGTTGGTTTGATTCGTTTGGGT
TTGTTGATTGTTGTGCAGGAACTGAACACTGAATATTGAGAGTTGTGGTT
ACCGGTAGGTGATCACTGGTGTTGGATGCTGAGGGTTCTAACACTTTGGT
TTCATATGCATTCGACGTAAGCTCGTTCGAGGTTAGGATATTGTCAATGT
AAGATCTGTTTGGTAGCGATATGTGATGATACGTGTAGGTGGGACCTTCG
CCTTTAGTTATGTCTATTGGATTTAGTTCATTATCTTCAATAAATTCAAT
GAGGTATTTAGAGAGTCTATTTTGCTGAGCAAATCTTGTTGTTTTTTGTA
CTTTTGGATATGATTGAAAGTCACCGAGGATGATTGTTTCACATGATTCT
GAAAATTGTTCGGTAATACCGGTGAGTGTGGCTAATTGGGATCTGTAGAT
ATCTGTACATTCTGTGTTCTGAGGTTGATTGAAGATATACTCCGGAGATA
AGAATTTGAGTGTTGTTGATGAAAGCTTGACAGTGGTTAGGAAATCTTCT
TGTATGATGGTGACTGTGTTGTGGAATGCTTGTTTGCTCAGTAGAAGAAC
AGTTCCACCAGACGGACGACCAGTGTTACTTTTCTTCGCTGGTTGAAATA
TTGTTTTAAATTTGTTTTTGTAATGATTTAAGAGGTGCTCTTCTGTTTTT
GTTATCCAGAGTTCATTCAGGAAGAGACAATCATAGGTATTTGTTAGAGA
GTCAACGTATGCACTGTTAGCTTTATATCCACTACAGTTTAAAGCTATAA
ATTTAATTTTGTCTGTAGTGGTTGTATCCTTTCTACCACCTTCCATCATT
AAGTGAGTCCCAATGGTTTACATCATGAGTGTTTCGCCTCAATCTGGTTT
GCTGGTTGTAATGATTTGTTCGTTTATGATGATTATCCTCTGATTGCTGA
TATTGTCGTTCTGGGTGGTTGTCCATGTTTCTGGGTGTTCTCCTGTGACG
ATATGGCTTAACAATAAGACCTTCAAACCAGGTTTTCTCCTCTAAAGCTT
TGTTTTTGTCTCTGATGTTGATGTCCACTTTGACCGACTTATTGTACTGG
TTTTCTTTATTGAGTTCgattttaattactttaattCCTACATCCTTTTC
GATTGTTTCCTTAATGTCTGTAATTTGTAGTTGTGGATGGAATCCTCCGA
CAAATAAAGAAAATGGTTTAGGGTTACCAATGACTGGTGTTTGGTTGGGA
ATTGAAGATAAGGGTTTTTTTCCTCCAAATATAATAACATTTTTacgtgg
tggaggtggtggtggCGGTAATTTT Coding sequence (CDS) from alignment at sc0002070:26796..28470 >TCONS_00039306 ID=TCONS_00039306|Name=TCONS_00039306|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0002070:26796..28470 (Clytia hemisphaerica)
CTATTTCTTTGGTTGGAAATGAAACTTATTGTTTTTCAGGTTGGCATAGC
TGTCAGAGGAGCACTGTAAGAGGAGTTCATTTAAGTTTGTTAAGTCTGTT
TCAACGTCATTTGTAGCTTCTAGTTGTTGAATAGCGGTGGTAACTTTATT
TTGGTATATAGAAATGAAGTGATTATTGTGCCATATATAATTGGGTAGTT
GAAATTGTTGGTTTGATTCGTTTGGGTTTGTTGATTGTTGTGCAGGAACT
GAACACTGAATATTGAGAGTTGTGGTTACCGGTAGGTGATCACTGGTGTT
GGATGCTGAGGGTTCTAACACTTTGGTTTCATATGCATTCGACGTAAGCT
CGTTCGAGGTTAGGATATTGTCAATGTAAGATCTGTTTGGTAGCGATATG
TGATGATACGTGTAGGTGGGACCTTCGCCTTTAGTTATGTCTATTGGATT
TAGTTCATTATCTTCAATAAATTCAATGAGGTATTTAGAGAGTCTATTTT
GCTGAGCAAATCTTGTTGTTTTTTGTACTTTTGGATATGATTGAAAGTCA
CCGAGGATGATTGTTTCACATGATTCTGAAAATTGTTCGGTAATACCGGT
GAGTGTGGCTAATTGGGATCTGTAGATATCTGTACATTCTGTGTTCTGAG
GTTGATTGAAGATATACTCCGGAGATAAGAATTTGAGTGTTGTTGATGAA
AGCTTGACAGTGGTTAGGAAATCTTCTTGTATGATGGTGACTGTGTTGTG
GAATGCTTGTTTGCTCAGTAGAAGAACAGTTCCACCAGACGGACGACCAG
TGTTACTTTTCTTCGCTGGTTGAAATATTGTTTTAAATTTGTTTTTGTAA
TGATTTAAGAGGTGCTCTTCTGTTTTTGTTATCCAGAGTTCATTCAGGAA
GAGACAATCATAGGTATTTGTTAGAGAGTCAACGTATGCACTGTTAGCTT
TATATCCACTACAGTTTAAAGCTATAAATTTAATTTTGTCTGTAGTGGTT
GTATCCTTTCTACCACCTTCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039306-exon-sc0002070-1491911889:26796..28470 | TCONS_00039306-exon-sc0002070-1491911889:26796..28470 | Clytia hemisphaerica | exon |
| TCONS_00039306-exon-sc0002070-1510915933:26796..28470 | TCONS_00039306-exon-sc0002070-1510915933:26796..28470 | Clytia hemisphaerica | exon |
| TCONS_00039306-exon-sc0002070-1575043694:26796..28470 | TCONS_00039306-exon-sc0002070-1575043694:26796..28470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002070 | supercontig | sc0002070:26796..28470 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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