TCONS_00039301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039301
Unique NameTCONS_00039301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039301 ID=TCONS_00039301|Name=TCONS_00039301|organism=Clytia hemisphaerica|type=transcript|length=208bp
GTTCACTTTCTGTTTCACCCTCACCATTAAACAAATGCCCAGGCTGAGAA
GCACGTACTCTAAGAAGGCGATCATTTGAAAGTTGCTTTTTTTCTTGAAG
CAAATAAAGAGCTGTCGACTTCCGTATAAATGCTCCGTTATAGCGTATGA
ACTGGGATTTGCCAAGACTGTTCATCAATGAATAGTTTCGTCCTGATTTA
TCGCTTTG
Run BLAST on NCBI

transcript from alignment at sc0002068:15929..16136

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039301 ID=TCONS_00039301|Name=TCONS_00039301|organism=Clytia hemisphaerica|type=transcript|length=208bp|location=Sequence derived from alignment at sc0002068:15929..16136 (Clytia hemisphaerica)
CAAAGCGATAAATCAGGACGAAACTATTCATTGATGAACAGTCTTGGCAA
ATCCCAGTTCATACGCTATAACGGAGCATTTATACGGAAGTCGACAGCTC
TTTATTTGCTTCAAGAAAAAAAGCAACTTTCAAATGATCGCCTTCTTAGA
GTACGTGCTTCTCAGCCTGGGCATTTGTTTAATGGTGAGGGTGAAACAGA
AAGTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023682XLOC_023682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039301-exon-sc0002068-1491911889:15929..16136TCONS_00039301-exon-sc0002068-1491911889:15929..16136Clytia hemisphaericaexon
TCONS_00039301-exon-sc0002068-1510915933:15929..16136TCONS_00039301-exon-sc0002068-1510915933:15929..16136Clytia hemisphaericaexon
TCONS_00039301-exon-sc0002068-1575043694:15929..16136TCONS_00039301-exon-sc0002068-1575043694:15929..16136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002068supercontigsc0002068:15929..16136 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	3.80391	1.39752	10.188	2.50171	0.271728	0	5.74531	0.987212	0	1.30192	2.71361	1.76178	5.71069	0	8.25593	0	2.10009	0	0	0.914437	0.812013	4.07075	0	0	1.67858
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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