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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039299 ID=TCONS_00039299|Name=TCONS_00039299|organism=Clytia hemisphaerica|type=transcript|length=1996bp
CTCATGCATTCAAcacaaatatttttgctttcttggTTAATCAGAAATAA
ATTGCTCTCATCTTCAACTTCCAACACGACGACGTCAACTGCATCTTCAA
TTATCAATTCTGCGTTTCTCCTATCAAACCCCACACACCAACACTCAAAA
AAGTATGTCCACCACACCGTGTCCCACCGTTGTTCCAGTTACGACCTCAT
CCGATATCCTGTTGAGTCAGCATATTACGATCCAAAATGGTATCTCTAAC
TGTGGTATTCCTTTTTCATCACAACGTCTGGACCTGAACGACTGTAAGAT
TTATATCTAACTCCACCCAAGATTATCCAGCAAATCCGCCTGGGTGAGcc
tgttgttttttattattttactgCCTGCACACTTGGGGAAGGCCCATTCG
TCGCCAGATTCGTTAATTTTCGATGAGGACATCAACTAAATGCCATAAAG
ACACTGATTCCAGCATCCTCTCCCAAATTTCAATTTGGCCTTGAGAATTA
CATGTCCCCTCCCCTTGATGATGGGGTGTCCTTTCTTCTCAACCTCTATT
AGGTCTCCGCCACACTTAGCCAACAAAATGTCTNTTTCAACTTGGCCTTG
AGAATTACATGTCCCCTCCCCTTGATGATGGGGTGTCCTTTCTTCTCAAC
CTCTATTAGGTCTCCGCCACACTTAGCCAACAAAATGTCTGATTATTACC
AGatagttttgattttctcacttGTATACATAGCATGGGGGTAAGGCACA
GTATAAGACAAGGCATGTCATTTAGGAGAACGTACATTTGGACTGGTTTT
AGTCAAAGTATCCCTCTGTAAGTTGGTCCCCAAATCCTCCCCTCTCCGAC
AATGGTGCGTCATACATCTCTTTAATAAATCCAATCAAGTCTCCCCCATC
ATTTTGAGCCAACGAAATGCCTAATTATTATTAGATTATTTGTCCTTTCT
CCCTCTTGTACACGTCGCAAAGGCGTACTTCGGGCTGGTTTTATTTAACA
TTCGTCCTTGTAATTGGTCCTCAAATATCAACCCACTTAGCTGTATCTCC
ATTTAGCGGTTTTGTTTATCTTCCTGCCTTTGTCAACCTGCATTGTTCCC
CGACCGGAGGTTACTTAGAACTATTATAGATCTCTCCGCTGACACTGTCA
GTGTTTTTCATACTTTCGGGTGGGTTATCTCATGTGTAAGTCTTAATGTT
ATGTTCCACCCTCATCTGATTGGCGTCTAACCTAATGATTGGTCCTTATT
TGGGTATTCCCGACAGCATTCGCAAGTCAATGTCCTGCATGTTTAATAGG
TTCCTCATTGTGCCTTCAAATCCTATTCCTGGCTAATTTTATATTGAGTT
GATTTGCTTTTGTGCTGCCCTTTCTTTAACCATACAGAATTTCAAAGCCT
ATTTACTTTCCGCAGTAGCTCTTCAAACCCAATCACCATGTCTATCATTC
CATCTTGCAGTGGCTTAGACCTTACTTAGCGTGTCTGGATTTCTTGCTTC
TTAGAACAATGACTCATTTCTTTCTGATCTTTCAGTGCTTAATGACTTAA
TTTCTCTTTCCTTTGATGCTCTCGAGGTTTAGGTGTCTTGCAGAAGGTCA
ATGGGGCCCATCTCCGGTAGGTCCTTTGACTAAGCTGATCTTACTCGCAA
TCCAGTATTCATAGCTTTTGCTGCTCACACTTCTCTAAAAGCTTCCTCAA
GTCAACGTGCACAGATAATCCACTACAAAACAGTTTTGTGTCAATTTTCC
TAAGGCTCTCATTTGGCTACTCTTCTTTCTCTCTTACCTTTCGTTCTTAC
CTTTCCTTCGCTTGCTACACGTTCTCGGCTCTGGTGACGTGTTTACTAGA
CCTTCTCTTGTTTTTTAGTCTCAGCTTCAGCTACCTTATTCAATTCGACT
CTCCCAAGTCGAATCATCATGCTGCCCCAATCAAGGGTTCCTCTGTAGTT
GATCTTATGTCTTCTTCTTTTAGGTTTACCTCTAATTCCACCTTNN Run BLAST on NCBI transcript from alignment at sc0002068:22053..24082- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039299 ID=TCONS_00039299|Name=TCONS_00039299|organism=Clytia hemisphaerica|type=transcript|length=2030bp|location=Sequence derived from alignment at sc0002068:22053..24082- (Clytia hemisphaerica)
CTCATGCATTCAACACAAATATTTTTGCTTTCTTGGTTAATCAGAAATAA
ATTGCTCTCATCTTCAACTTCCAACACGACGACGTCAACTGCATCTTCAA
TTATCAATTCTGCGTTTCTCCTATCAAACCCCACACACCAACACTCAAAA
AAGTATGTCCACCACACCGTGTCCCACCGTTGTTCCAGTTACGACCTCAT
CCGATATCCTGTTGAGTCAGCATATTACGATCCAAAATGGTATCTCTAAC
TGTGGTATTCCTTTTTCATCACAACGTCTGGACCTGAACGACTGTAAGAT
TTATATCTAACTCCACCCAAGATTATCCAGCAAATCCGCCTGGGTGAGCC
TGTTGTTTTTTATTATTTTACTGCCTGCACACTTGGGGAAGGCCCATTCG
TCGCCAGATTCGTTAATTTTCGATGAGGACATCAACTAAATGCCATAAAG
ACACTGATTCCAGCATCCTCTCCCAAATTTCAATTTGGCCTTGAGAATTA
CATGTCCCCTCCCCTTGATGATGGGGTGTCCTTTCTTCTCAACCTCTATT
AGGTCTCCGCCACACTTAGCCAACAAAATGTCTNTTTCAACTTGGCCTTG
AGAATTACATGTCCCCTCCCCTTGATGATGGGGTGTCCTTTCTTCTCAAC
CTCTATTAGGTCTCCGCCACACTTAGCCAACAAAATGTCTGATTATTACC
AGATAGTTTTGATTTTCTCACTTGTATACATAGCATGGGGGTAAGGCACA
GTATAAGACAAGGCATGTCATTTAGGAGAACGTACATTTGGACTGGTTTT
AGTCAAAGTATCCCTCTGTAAGTTGGTCCCCAAATCCTCCCCTCTCCGAC
AATGGTGCGTCATACATCTCTTTAATAAATCCAATCAAGTCTCCCCCATC
ATTTTGAGCCAACGAAATGCCTAATTATTATTAGATTATTTGTCCTTTCT
CCCTCTTGTACACGTCGCAAAGCATAGTATAACACTGTCAGTGTCATTCT
AAGAGGGCGTACTTCGGGCTGGTTTTATTTAACATTCGTCCTTGTAATTG
GTCCTCAAATATCAACCCACTTAGCTGTATCTCCATTTAGCGGTTTTGTT
TATCTTCCTGCCTTTGTCAACCTGCATTGTTCCCCGACCGGAGGTTACTT
AGAACTATTATAGATCTCTCCGCTGACACTGTCAGTGTTTTTCATACTTT
CGGGTGGGTTATCTCATGTGTAAGTCTTAATGTTATGTTCCACCCTCATC
TGATTGGCGTCTAACCTAATGATTGGTCCTTATTTGGGTATTCCCGACAG
CATTCGCAAGTCAATGTCCTGCATGTTTAATAGGTTCCTCATTGTGCCTT
CAAATCCTATTCCTGGCTAATTTTATATTGAGTTGATTTGCTTTTGTGCT
GCCCTTTCTTTAACCATACAGAATTTCAAAGCCTATTTACTTTCCGCAGT
AGCTCTTCAAACCCAATCACCATGTCTATCATTCCATCTTGCAGTGGCTT
AGACCTTACTTAGCGTGTCTGGATTTCTTGCTTCTTAGAACAATGACTCA
TTTCTTTCTGATCTTTCAGTGCTTAATGACTTAATTTCTCTTTCCTTTGA
TGCTCTCGAGGTTTAGGTGTCTTGCAGAAGGTCAATGGGGCCCATCTCCG
GTAGGTCCTTTGACTAAGCTGATCTTACTCGCAATCCAGTATTCATAGCT
TTTGCTGCTCACACTTCTCTAAAAGCTTCCTCAAGTCAACGTGCACAGAT
AATCCACTACAAAACAGTTTTGTGTCAATTTTCCTAAGGCTCTCATTTGG
CTACTCTTCTTTCTCTCTTACCTTTCGTTCTTACCTTTCCTTCGCTTGCT
ACACGTTCTCGGCTCTGGTGACGTGTTTACTAGACCTTCTCTTGTTTTTT
AGTCTCAGCTTCAGCTACCTTATTCAATTCGACTCTCCCAAGTCGAATCA
TCATGCTGCCCCAATCAAGGGTTCCTCTGTAGTTGATCTTATGTCTTCTT
CTTTTAGGTTTACCTCTAATTCCACCTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039299-exon-sc0002068-1575043694:23112..24082 | TCONS_00039299-exon-sc0002068-1575043694:23112..24082 | Clytia hemisphaerica | exon |
| TCONS_00039299-exon-sc0002068-1575043694:22053..23077 | TCONS_00039299-exon-sc0002068-1575043694:22053..23077 | Clytia hemisphaerica | exon |
| TCONS_00039299-exon-sc0002068-1510915933:23112..24082 | TCONS_00039299-exon-sc0002068-1510915933:23112..24082 | Clytia hemisphaerica | exon |
| TCONS_00039299-exon-sc0002068-1510915933:22053..23077 | TCONS_00039299-exon-sc0002068-1510915933:22053..23077 | Clytia hemisphaerica | exon |
| TCONS_00039299-exon-sc0002068-1491911889:23112..24082 | TCONS_00039299-exon-sc0002068-1491911889:23112..24082 | Clytia hemisphaerica | exon |
| TCONS_00039299-exon-sc0002068-1491911889:22053..23077 | TCONS_00039299-exon-sc0002068-1491911889:22053..23077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002068 | supercontig | sc0002068:22053..24082 - |
Blast
The following BLAST results are available for this feature:
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