TCONS_00039294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039294
Unique NameTCONS_00039294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039294 ID=TCONS_00039294|Name=TCONS_00039294|organism=Clytia hemisphaerica|type=transcript|length=486bp
CTAGGCGTAGTCAATCCACGGCATCGATTTTCAATGTAATCGGTATTAAA
TCGATTAATTGATTAAATTATCGATGATAATCGACGTTAATCGATGGTTG
ATCAATGCTTATCAACGGATAATCGATGTTAATCGGCTGGCACCCTCTCC
TTCATTCAGACAGACAGCGCTAATGAAAAGGTTTCCTTCGTTTTGACCTT
GACTGTGGTCTCCAACTTACTTACTTTCATGAATATTACCTCTCGTAATA
ATTATCGCGTTATCTTATTAACACCTattatgttatctttttatttttgt
cctTTCTAGAGACGCACAGGATGTCGTGTTACACAAAGATTCCAAATGGC
AAGAACAATGGAAAGATTTTAGAGATAACAACCCCGTTGTCACTGGTAAG
GTTTTTCTCTACACTGGCCACTTAGCTTAAAAAGGAAAGACAACCTATAA
AACTTATGTATCATCTCTCTATCATTAATAAGGCTA
Run BLAST on NCBI

transcript from alignment at sc0002067:5538..6023

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039294 ID=TCONS_00039294|Name=TCONS_00039294|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at sc0002067:5538..6023 (Clytia hemisphaerica)
TAGCCTTATTAATGATAGAGAGATGATACATAAGTTTTATAGGTTGTCTT
TCCTTTTTAAGCTAAGTGGCCAGTGTAGAGAAAAACCTTACCAGTGACAA
CGGGGTTGTTATCTCTAAAATCTTTCCATTGTTCTTGCCATTTGGAATCT
TTGTGTAACACGACATCCTGTGCGTCTCTAGAAaggacaaaaataaaaag
ataacataatAGGTGTTAATAAGATAACGCGATAATTATTACGAGAGGTA
ATATTCATGAAAGTAAGTAAGTTGGAGACCACAGTCAAGGTCAAAACGAA
GGAAACCTTTTCATTAGCGCTGTCTGTCTGAATGAAGGAGAGGGTGCCAG
CCGATTAACATCGATTATCCGTTGATAAGCATTGATCAACCATCGATTAA
CGTCGATTATCATCGATAATTTAATCAATTAATCGATTTAATACCGATTA
CATTGAAAATCGATGCCGTGGATTGACTACGCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023677XLOC_023677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039294-exon-sc0002067-1491911889:5538..6023TCONS_00039294-exon-sc0002067-1491911889:5538..6023Clytia hemisphaericaexon
TCONS_00039294-exon-sc0002067-1510915933:5538..6023TCONS_00039294-exon-sc0002067-1510915933:5538..6023Clytia hemisphaericaexon
TCONS_00039294-exon-sc0002067-1575043694:5538..6023TCONS_00039294-exon-sc0002067-1575043694:5538..6023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002067supercontigsc0002067:5538..6023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.5862	3.37221	1.45017	0.993136	16.7539	13.3757	13.6672	15.8782	6.90747	7.62021	4.02258	4.86208	4.25905	4.3346	4.50909	5.22918	10.384	5.91292	2.04225	1.70966	4.58184	4.53013	6.02094	5.20689	11.1385	11.4136	4.74177	2.24913	4.12256	5.50375
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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