TCONS_00039292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039292
Unique NameTCONS_00039292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039292 ID=TCONS_00039292|Name=TCONS_00039292|organism=Clytia hemisphaerica|type=transcript|length=291bp
GNATTTTCATCAAACTTTTCGCGTAAAAGGACTGCCTGCTCTCTCCAAGC
TTCTCTGTTCATTGTCCACGATAGTAAATGTTTCAATGACTTTCTATAGA
GTCTAGTAACCCTTTGATGATGGGTTAACTGTCTGCTCAAAGCAAGTGGA
TTGACCGCCATCTTGATTCTTGTCCACTGAGGTGTTCCCGGAAAGAGTTA
CATCGGATCACCCAAAGTAccctcatgttttttttttattttcttatctc
tgatcctgtctctctcttttctgactgtctgagtttctgag
Run BLAST on NCBI

transcript from alignment at sc0002066:26326..26616

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039292 ID=TCONS_00039292|Name=TCONS_00039292|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0002066:26326..26616 (Clytia hemisphaerica)
ctcagaaactcagacagtcagaaaagagagagacaggatcagagataaga
aaataaaaaaaaaacatgagggTACTTTGGGTGATCCGATGTAACTCTTT
CCGGGAACACCTCAGTGGACAAGAATCAAGATGGCGGTCAATCCACTTGC
TTTGAGCAGACAGTTAACCCATCATCAAAGGGTTACTAGACTCTATAGAA
AGTCATTGAAACATTTACTATCGTGGACAATGAACAGAGAAGCTTGGAGA
GAGCAGGCAGTCCTTTTACGCGAAAAGTTTGATGAAAATNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023675XLOC_023675Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039292-exon-sc0002066-1491911889:26326..26616TCONS_00039292-exon-sc0002066-1491911889:26326..26616Clytia hemisphaericaexon
TCONS_00039292-exon-sc0002066-1510915933:26326..26616TCONS_00039292-exon-sc0002066-1510915933:26326..26616Clytia hemisphaericaexon
TCONS_00039292-exon-sc0002066-1575043694:26326..26616TCONS_00039292-exon-sc0002066-1575043694:26326..26616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002066supercontigsc0002066:26326..26616 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.41178	2.52272	0.569303	1.85105	53.0709	43.5124	68.0777	95.7553	32.9429	37.31	29.3956	30.4382	27.5692	36.9223	1.528	2.74994	2.29183	1.18933	0	1.17515	0.966268	3.4406	1.57868	2.04167	231.945	224.893	8.18529	14.0858	3.19421	6.95251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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