TCONS_00039290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039290
Unique NameTCONS_00039290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039290 ID=TCONS_00039290|Name=TCONS_00039290|organism=Clytia hemisphaerica|type=transcript|length=731bp
ctAGTGATTTGCCAAAAATTGTCAATCCAAAAGGTTTCAGTACGAAAAGA
AAAGAATACCTTTATACAGATATTCGTGAATTCTGCACATAGGAAACAAA
GGATCTCACAGCGCCTGATCCAAGAACATACTAGTATTCCTATGATAGGA
AATAAAGGAAATATGTTATTTATTTCTTAGTTCCGAGCAAAAAAAGTGTT
TCATCAATTCATTGCGAATTGATGTTAGTTGCATTCAATGTGAATTGCAC
AAGTCTAACATCTAAGATGTTAGATACTCTTTCTTTATTGCaaattaaga
gaaaaaaatactaGTAGATCATTGCGATCGGTATCACTTTTTGATATGCT
TGGTTTTTGTTATTGACTATAAATTACAGTCAGCCCTAATAATTAATTTA
TCTTTTTGTTAGGGTGGAGTACTAAATCCTATTGGCTTACCTTCACGTGG
TGTACTCTATTACGTACTTTCAACAATAAAATCTTACAAAGTTGTGTCCA
TTAATACCTTTACTTGTATATAATGACTCTGTTTCAATGTGTTGAAAGTG
TTAACTAAAAGCCAAAGGTAGAACAAAGGGTAGAGCTCTGATAATAAGAA
CAAATCAGACATCATTATTTTCTTGGCAAAACAAACATTCTCTTCTTTTT
TACGTTAAGTTcagtttttacttttctttttttgatagtgaatattaaaa
aatttaaaaaagggaATTGACGGTGCAGGCG
Run BLAST on NCBI

transcript from alignment at sc0002058:20575..21305

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039290 ID=TCONS_00039290|Name=TCONS_00039290|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0002058:20575..21305 (Clytia hemisphaerica)
CGCCTGCACCGTCAATtcccttttttaaattttttaatattcactatcaa
aaaaagaaaagtaaaaactgAACTTAACGTAAAAAAGAAGAGAATGTTTG
TTTTGCCAAGAAAATAATGATGTCTGATTTGTTCTTATTATCAGAGCTCT
ACCCTTTGTTCTACCTTTGGCTTTTAGTTAACACTTTCAACACATTGAAA
CAGAGTCATTATATACAAGTAAAGGTATTAATGGACACAACTTTGTAAGA
TTTTATTGTTGAAAGTACGTAATAGAGTACACCACGTGAAGGTAAGCCAA
TAGGATTTAGTACTCCACCCTAACAAAAAGATAAATTAATTATTAGGGCT
GACTGTAATTTATAGTCAATAACAAAAACCAAGCATATCAAAAAGTGATA
CCGATCGCAATGATCTACtagtatttttttctcttaatttGCAATAAAGA
AAGAGTATCTAACATCTTAGATGTTAGACTTGTGCAATTCACATTGAATG
CAACTAACATCAATTCGCAATGAATTGATGAAACACTTTTTTTGCTCGGA
ACTAAGAAATAAATAACATATTTCCTTTATTTCCTATCATAGGAATACTA
GTATGTTCTTGGATCAGGCGCTGTGAGATCCTTTGTTTCCTATGTGCAGA
ATTCACGAATATCTGTATAAAGGTATTCTTTTCTTTTCGTACTGAAACCT
TTTGGATTGACAATTTTTGGCAAATCACTag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023673XLOC_023673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039290-exon-sc0002058-1491911889:20575..21305TCONS_00039290-exon-sc0002058-1491911889:20575..21305Clytia hemisphaericaexon
TCONS_00039290-exon-sc0002058-1510915933:20575..21305TCONS_00039290-exon-sc0002058-1510915933:20575..21305Clytia hemisphaericaexon
TCONS_00039290-exon-sc0002058-1575043694:20575..21305TCONS_00039290-exon-sc0002058-1575043694:20575..21305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002058supercontigsc0002058:20575..21305 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27186	0.0662766	0.153907	0.677583	0.366619	0.0724267	0.349519	0	0	0	0	0.181057	0	0	0.0385928	0.041416	0.0510211	0	0.216745	0	0.0657124	0.192313	0	0.0708473	0.291884	0.0651249	0.186387	0.0994587	0.0754359	0.0768572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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