TCONS_00039289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039289
Unique NameTCONS_00039289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039289 ID=TCONS_00039289|Name=TCONS_00039289|organism=Clytia hemisphaerica|type=transcript|length=847bp
NGCTGAAAAGAAGAGCAGAAAAAGCAGAGTGGAGAAGGTCAGGGAAGCAG
AGGGAAACAGAGAACACGTGAAGACTCAAGaaCCTGAACGAACTGTTGTA
AATGGTAGCAAAATGAAATTGGTGAATTCCTTCTTATTCGAGGAAGTGAA
TCTGAAGAAAAACCCACCTAAGCCAGACAAAGAAGTAGCTGCCGTGTCAA
AAGCTTGCCAGAAGCAACCTCCACCATCTTCAGGTGCTTCTGATGCTGCA
ACATCAACACAACCTCCGGTTACGTCATCAACACAACCTCCGGTTACGTC
ATCAAATCCTCCTCCGGTTACAGCCACGAATCCTGCTCCGCTTGTAGCCA
CGAATCCTGCTCCGCTTGTAGCCACGAATCCTGCTCCGATTACGTCATTG
AATCCTGCTCCGATTACGTCATTGAATCCTCCTTTGGTTGCGGCAACGAG
TCCTCCTCTGGTTGCGGTTACGTCATTGAATCCTGCTCCGATTACGTCAT
TGAATCCTGCTCCGATTACGTCATTGAATCCTCCTTTGGTTGCGGCAACG
AGTCCTCCTCTGGTTGCGGCAACGAGTCCTCCTCTGGTTGCGGTTACGTC
ATTGAATCCACATCTGGTTGCGGCAACGAATTCTCCTCCGGTTgcgtcaa
cgaatccttctctggttacgtcaacgaatccttctctggttacgtcaacg
aatccttctccggttacgtcaacgaatccttctccGGTTACGTTAACGAA
TCCTTCTCCGGTTAAGTACACGAGCCCACTGGTTACGTCGACAAGTTCTC
TGGTTACGTCGACAAGTTCTCTGGTTACGATAACCACGTCAGCTANN
Run BLAST on NCBI

transcript from alignment at sc0002058:26946..31377+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039289 ID=TCONS_00039289|Name=TCONS_00039289|organism=Clytia hemisphaerica|type=transcript|length=4432bp|location=Sequence derived from alignment at sc0002058:26946..31377+ (Clytia hemisphaerica)
NGCTGAAAAGAAGAGCAGAAAAAGCAGAGTGGAGAAGGTCAGGGAAGCAG
AGGGAAACAGAGAACACGTGAAGACTCAAGaagtaaaattttttattctt
taagTCACCTTTCAAAGTTAAGATTCGTTTGTCCTGTATGGACAAAATGC
TGTAATAACAATTTAGATCAAAGCAtcattctacaagaagttaattttct
tcttcgtttttttttgcttgatgatattccactcacaaatatcttttcaa
tgggcacaaaattgtaattttgagacagactttagtttgttaaaaaatgg
aaaaacgaagaagaagaaaattaacttCCTGTAGAATGATGCTTTGATCT
TAACTGTTATTACAGGATTTTGTTATGctcaaaatatcttttcatCTTAA
CGTTtctgtcaaaagttacagccattttttctcagctgaaaattattttg
agacagactttaattaaaattcaatcaaaagttaacAAGGTTTGAAAAAC
ACTGTCAGCTAATTTGAATTAGTCTTTAAAGTGAGGATTCTGTCCTATTT
GGAACCCTATTAACCctattaattaaaaaagtttaaatttctcATTTAAA
GAACCACAGCGCTttaccaatcagaagcttcttgggtttttgaaaacaat
agtagcaatatttttaacaatattCNNNNNNNNNNNNNNNNNNNNNNNNN
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attcacttttttgcttggaagagctttaagcacgacatctagccctttgg
gctttttAAGCCTGTGCTTCTTTAAATGAGAAATTAGTGCTTTTGTCAGA
AAACTGTAAAAATCACTAATCTAAGTTTTCCTACTGAACAATGCTTGCAC
CATCTTGTCTATGTTACCCACTCACTTAGCGGGTACCAATTTTAAACAGA
ATCATTTATTTCTACAGCCTGAACGAACTGTTGTAAATGGTAGCAAAATG
AAATTGGTGAATTCCTTCTTATTCGAGGAAGTGAATCTGAAGAAAAACCC
ACCTAAGCCAGACAAAGAAGTAGCTGCCGTGTCAAAAGCTTGCCAGAAGC
AACCTCCACCATCTTCAGGTGCTTCTGATGCTGCAACATCAACACAACCT
CCGGTTACGTCATCAACACAACCTCCGGTTACGTCATCAAATCCTCCTCC
GGTTACAGCCACGAATCCTGCTCCGCTTGTAGCCACGAATCCTGCTCCGC
TTGTAGCCACGAATCCTGCTCCGATTACGTCATTGAATCCTGCTCCGATT
ACGTCATTGAATCCTCCTTTGGTTGCGGCAACGAGTCCTCCTCTGGTTGC
GGTTACGTCATTGAATCCTGCTCCGATTACGTCATTGAATCCTGCTCCGA
TTACGTCATTGAATCCTCCTTTGGTTGCGGCAACGAGTCCTCCTCTGGTT
GCGGCAACGAGTCCTCCTCTGGTTGCGGTTACGTCATTGAATCCACATCT
GGTTGCGGCAACGAATTCTCCTCCGGTTgcgtcaacgaatccttctctgg
ttacgtcaacgaatccttctctggttacgtcaacgaatccttctccggtt
acgtcaacgaatccttctccGGTTACGTTAACGAATCCTTCTCCGGTTAA
GTACACGAGCCCACTGGTTACGTCGACAAGTTCTCTGGTTACGTCGACAA
GTTCTCTGGTTACGATAACCACGTCAGCTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023672XLOC_023672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039289-exon-sc0002058-1491911889:26946..27027TCONS_00039289-exon-sc0002058-1491911889:26946..27027Clytia hemisphaericaexon
TCONS_00039289-exon-sc0002058-1510915933:26946..27027TCONS_00039289-exon-sc0002058-1510915933:26946..27027Clytia hemisphaericaexon
TCONS_00039289-exon-sc0002058-1575043694:26946..27027TCONS_00039289-exon-sc0002058-1575043694:26946..27027Clytia hemisphaericaexon
TCONS_00039289-exon-sc0002058-1491911889:30613..31377TCONS_00039289-exon-sc0002058-1491911889:30613..31377Clytia hemisphaericaexon
TCONS_00039289-exon-sc0002058-1510915933:30613..31377TCONS_00039289-exon-sc0002058-1510915933:30613..31377Clytia hemisphaericaexon
TCONS_00039289-exon-sc0002058-1575043694:30613..31377TCONS_00039289-exon-sc0002058-1575043694:30613..31377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002058supercontigsc0002058:26946..31377 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.666586	0.410414	0.566657	0.0615984	3.90829	3.13333	3.69777	4.1833	1.31978	3.87771	1.70345	1.89652	4.48387	4.81739	5.49353	7.16635	4.10679	3.51339	3.55644	5.77948	2.40885	2.2247	1.73355	1.80786	4.00878	3.72006	3.65781	4.1277	4.25231	2.71302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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