|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039287 ID=TCONS_00039287|Name=TCONS_00039287|organism=Clytia hemisphaerica|type=transcript|length=960bp
CGAAAAGAATTTATGTTTAGATATCCAATAGTCGGGTTTTTTGACTTCTT
TCTTAGAGAAATTAATTTGTCTAAGTTTGTGTCTTTCGTGCGTCATTCCA
AGTCCCtaatatatttgataaaattttgggcAAGGCGAGAATTCCCATGA
TTGTTAAGATGAAGTTTACCTATTGAATGCTGGTTTTCTGTAATGTTACC
GTTGTCTATAAgatcaaatttcatattttcacacATTTCCTTCAAACCTG
TATTCAAATTTGTAACTTTATCAGGACCATCTGGAGTATCAGTACGAACA
ACACAGTTTGAAATTACCAATTTCGTTCTTGGTGAGATCTTCTTTGCAAT
GCGATTTATAGCTTCCAAGTTTTTCGTTGTTTCACCATCACTCGTAAGGT
CATTTGTTCCACCATGGATGATCATGACATCGGCCTTTTTCCTTCTCAAA
ATAGGCTTTATGTGATCGATCAAATCCTCCGTGTTAGCACCGGGGTGTGG
TCTGATCTTTACATCATGTTGAAGTTTTCTAAATCCAACTTCTTTCTGGC
CGTTCAGCATAAAGTCTCCAATAATATACaccttttttctttctctcaAA
TTCTCTTCTGTGTTCTCTTCTGTATTCTCTCTTCTTTCATCTGGTTTCtc
gtttttgcgttttttagAAAGGgctttctcttttttatcttttctgtcat
ttgtattgtcttttttattACTTTCCTCTGTAACAGTGTTctgactttct
gattttttattaCCATTAGTGTTTCCCTCATTACGAGATAACAGCATTTC
GATTAGTTTATTTTTTGAGATCAACTCTTCTCTAAGAAAATCTATTTCTT
TTGCCATGTGATGGATCAGGTCTTTGTGATCATAACTTTCTAAAGAAAAG
GACTCCCTTCCAAAAGATGATTTTTTAAGTGGTGCAATACTTTCCATAAC
AAATTCATGA Run BLAST on NCBI protein sequence of TCONS_00039287-protein >TCONS_00039287-protein ID=TCONS_00039287-protein|Name=TCONS_00039287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
HEFVMESIAPLKKSSFGRESFSLESYDHKDLIHHMAKEIDFLREELISKN
KLIEMLLSRNEGNTNGNKKSESQNTVTEESNKKDNTNDRKDKKEKALSKK
RKNEKPDERRENTEENTEENLRERKKVYIIGDFMLNGQKEVGFRKLQHDV
KIRPHPGANTEDLIDHIKPILRRKKADVMIIHGGTNDLTSDGETTKNLEA
INRIAKKISPRTKLVISNCVVRTDTPDGPDKVTNLNTGLKEMCENMKFDL
IDNGNITENQHSIGKLHLNNHGNSRLAQNFIKYIRDLE Run BLAST on NCBI transcript from alignment at sc0002057:18424..19383 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039287 ID=TCONS_00039287|Name=TCONS_00039287|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0002057:18424..19383 (Clytia hemisphaerica)
TCATGAATTTGTTATGGAAAGTATTGCACCACTTAAAAAATCATCTTTTG
GAAGGGAGTCCTTTTCTTTAGAAAGTTATGATCACAAAGACCTGATCCAT
CACATGGCAAAAGAAATAGATTTTCTTAGAGAAGAGTTGATCTCAAAAAA
TAAACTAATCGAAATGCTGTTATCTCGTAATGAGGGAAACACTAATGGta
ataaaaaatcagaaagtcagAACACTGTTACAGAGGAAAGTaataaaaaa
gacaatacaaatgacagaaaagataaaaaagagaaagcCCTTTctaaaaa
acgcaaaaacgaGAAACCAGATGAAAGAAGAGAGAATACAGAAGAGAACA
CAGAAGAGAATTtgagagaaagaaaaaaggtGTATATTATTGGAGACTTT
ATGCTGAACGGCCAGAAAGAAGTTGGATTTAGAAAACTTCAACATGATGT
AAAGATCAGACCACACCCCGGTGCTAACACGGAGGATTTGATCGATCACA
TAAAGCCTATTTTGAGAAGGAAAAAGGCCGATGTCATGATCATCCATGGT
GGAACAAATGACCTTACGAGTGATGGTGAAACAACGAAAAACTTGGAAGC
TATAAATCGCATTGCAAAGAAGATCTCACCAAGAACGAAATTGGTAATTT
CAAACTGTGTTGTTCGTACTGATACTCCAGATGGTCCTGATAAAGTTACA
AATTTGAATACAGGTTTGAAGGAAATgtgtgaaaatatgaaatttgatcT
TATAGACAACGGTAACATTACAGAAAACCAGCATTCAATAGGTAAACTTC
ATCTTAACAATCATGGGAATTCTCGCCTTgcccaaaattttatcaaatat
attaGGGACTTGGAATGACGCACGAAAGACACAAACTTAGACAAATTAAT
TTCTCTAAGAAAGAAGTCAAAAAACCCGACTATTGGATATCTAAACATAA
ATTCTTTTCG Coding sequence (CDS) from alignment at sc0002057:18424..19383 >TCONS_00039287 ID=TCONS_00039287|Name=TCONS_00039287|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at sc0002057:18424..19383 (Clytia hemisphaerica)
CATGAATTTGTTATGGAAAGTATTGCACCACTTAAAAAATCATCTTTTGG
AAGGGAGTCCTTTTCTTTAGAAAGTTATGATCACAAAGACCTGATCCATC
ACATGGCAAAAGAAATAGATTTTCTTAGAGAAGAGTTGATCTCAAAAAAT
AAACTAATCGAAATGCTGTTATCTCGTAATGAGGGAAACACTAATGGtaa
taaaaaatcagaaagtcagAACACTGTTACAGAGGAAAGTaataaaaaag
acaatacaaatgacagaaaagataaaaaagagaaagcCCTTTctaaaaaa
cgcaaaaacgaGAAACCAGATGAAAGAAGAGAGAATACAGAAGAGAACAC
AGAAGAGAATTtgagagaaagaaaaaaggtGTATATTATTGGAGACTTTA
TGCTGAACGGCCAGAAAGAAGTTGGATTTAGAAAACTTCAACATGATGTA
AAGATCAGACCACACCCCGGTGCTAACACGGAGGATTTGATCGATCACAT
AAAGCCTATTTTGAGAAGGAAAAAGGCCGATGTCATGATCATCCATGGTG
GAACAAATGACCTTACGAGTGATGGTGAAACAACGAAAAACTTGGAAGCT
ATAAATCGCATTGCAAAGAAGATCTCACCAAGAACGAAATTGGTAATTTC
AAACTGTGTTGTTCGTACTGATACTCCAGATGGTCCTGATAAAGTTACAA
ATTTGAATACAGGTTTGAAGGAAATgtgtgaaaatatgaaatttgatcTT
ATAGACAACGGTAACATTACAGAAAACCAGCATTCAATAGGTAAACTTCA
TCTTAACAATCATGGGAATTCTCGCCTTgcccaaaattttatcaaatata
ttaGGGACTTGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039287-exon-sc0002057-1491911889:18424..19383 | TCONS_00039287-exon-sc0002057-1491911889:18424..19383 | Clytia hemisphaerica | exon |
| TCONS_00039287-exon-sc0002057-1510915933:18424..19383 | TCONS_00039287-exon-sc0002057-1510915933:18424..19383 | Clytia hemisphaerica | exon |
| TCONS_00039287-exon-sc0002057-1575043694:18424..19383 | TCONS_00039287-exon-sc0002057-1575043694:18424..19383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002057 | supercontig | sc0002057:18424..19383 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
|
