TCONS_00039279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039279
Unique NameTCONS_00039279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039279 ID=TCONS_00039279|Name=TCONS_00039279|organism=Clytia hemisphaerica|type=transcript|length=224bp
TTGCTCCTGGAAATGCATAGCCGTtccctggaaaaattttgaaagttctg
taacaattctccagctggaaattcaCACGTGTTCCAGGCTGATTTTCACA
ACTTTTTCACAGCTGGTAGAATTTTGAAGCTGTTCCTTTAACCAACTAGC
TGGAAATCTGGAGCCATTCCCGGGACGATTTCtagcttctttttcttttt
ttctgagcCGTTCCTTGAGTTAGC
Run BLAST on NCBI

transcript from alignment at sc0002055:29709..29932

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039279 ID=TCONS_00039279|Name=TCONS_00039279|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at sc0002055:29709..29932 (Clytia hemisphaerica)
GCTAACTCAAGGAACGgctcagaaaaaaagaaaaagaagctaGAAATCGT
CCCGGGAATGGCTCCAGATTTCCAGCTAGTTGGTTAAAGGAACAGCTTCA
AAATTCTACCAGCTGTGAAAAAGTTGTGAAAATCAGCCTGGAACACGTGt
gaatttccagctggagaattgttacagaactttcaaaatttttccaggga
ACGGCTATGCATTTCCAGGAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023662XLOC_023662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039279-exon-sc0002055-1491911889:29709..29932TCONS_00039279-exon-sc0002055-1491911889:29709..29932Clytia hemisphaericaexon
TCONS_00039279-exon-sc0002055-1510915933:29709..29932TCONS_00039279-exon-sc0002055-1510915933:29709..29932Clytia hemisphaericaexon
TCONS_00039279-exon-sc0002055-1575043694:29709..29932TCONS_00039279-exon-sc0002055-1575043694:29709..29932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002055supercontigsc0002055:29709..29932 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.630078	0	0.435366	0	0	3.31646	0.99379	4.11604	4.3668	2.13687	0	0	1.40612	0	1.9874	2.97205	3.87754	0	1.64391	0	1.84756	0.458989	0	0	3.40072	3.63945	2.05363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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