TCONS_00039277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039277
Unique NameTCONS_00039277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039277 ID=TCONS_00039277|Name=TCONS_00039277|organism=Clytia hemisphaerica|type=transcript|length=283bp
TGGTGATGTTTGGATATGAATCATGATTACTGGACCACTTTGCAGTAGAA
GGAGGAATTTCCAAAGGGTTCAAACTGGACGAAAACTTGTAATGTCTCTT
AAATAAAACGTTTGATTCGATTAATCAGCTCATCTTTGGAGCCTGTTGAA
GAAAGACCAATGTCTTTTAACCACTCTAATGCTTCTTCTTTGGTAAATTT
AGATATATTTTCAACTAACTTCTTCGCGCTCATTCTACCttcctatattt
tttatttactttcgcTTTTGTATTTGGCTGTCG
Run BLAST on NCBI

transcript from alignment at sc0002055:13818..14100

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039277 ID=TCONS_00039277|Name=TCONS_00039277|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at sc0002055:13818..14100 (Clytia hemisphaerica)
CGACAGCCAAATACAAAAgcgaaagtaaataaaaaatataggaaGGTAGA
ATGAGCGCGAAGAAGTTAGTTGAAAATATATCTAAATTTACCAAAGAAGA
AGCATTAGAGTGGTTAAAAGACATTGGTCTTTCTTCAACAGGCTCCAAAG
ATGAGCTGATTAATCGAATCAAACGTTTTATTTAAGAGACATTACAAGTT
TTCGTCCAGTTTGAACCCTTTGGAAATTCCTCCTTCTACTGCAAAGTGGT
CCAGTAATCATGATTCATATCCAAACATCACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023660XLOC_023660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039277-exon-sc0002055-1491911889:13818..14100TCONS_00039277-exon-sc0002055-1491911889:13818..14100Clytia hemisphaericaexon
TCONS_00039277-exon-sc0002055-1510915933:13818..14100TCONS_00039277-exon-sc0002055-1510915933:13818..14100Clytia hemisphaericaexon
TCONS_00039277-exon-sc0002055-1575043694:13818..14100TCONS_00039277-exon-sc0002055-1575043694:13818..14100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002055supercontigsc0002055:13818..14100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175451	0.463763	0.829192	2.43751	2.34924	2.81863	1.83429	5.54021	0.80152	0.496406	0	0.439048	1.74072	0.656944	1.72744	0.950486	0.714029	1.14133	0.50555	1.05804	0.644213	0	0.344287	0.603246	1.78293	0	3.73052	0	1.97775	0.0172388
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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