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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039275 ID=TCONS_00039275|Name=TCONS_00039275|organism=Clytia hemisphaerica|type=transcript|length=1048bp
cAAATCAATACCAAGCTACAGTTTATTTATATACCAAAGACATGAAGTTA
GATAACTTATGATGAGAAATAATTTGAGAaagtttgtctttgtttttctc
ttcatctgtctgtctgtctgtctgtctgtctgtctgtaactTCAAAGATG
TTcggtttttttgggtgaaaccTGGGGTAGTTTTTGTTTTAACCAATAGG
TTTACAGTTTCTCAGGCTTtgtcatttcaaaattccagaatcaTTCCAAA
ATTGCACTcctaaaaagtactttaggcATGTGGTGAGGAGTGCTATGAAT
AACTTTAGtagtaaaatccaaatttatggCCTGTGTTTGATCGCACTCCT
CAAGAATTTCAGGTGTGTGTGAATCGTTAATTCAAACAACTGCGACccaa
gtttttctttatacaaACCATAGATACAACAGAACAtaaatttatcttta
aaaagctttaaacactaaaataaaatcctccaaAAGCCAAAGCAAGCTTG
GAAACACAAAAATCCTTCCTCTCGCTAAGGGCGTCATCTtggtttgaaaa
tgtttaaatcaaTTTGAGGAGATGTAAATCTGAACCTTTTCAGTCTTGAA
CCCAAAAATTCGAACCTTCAGACAGACAGGAAATCTAGTACTATTATTCT
GGAAAGATGATTCAAgttcttgttgtttttgttttgatttttttgtttac
tcatgAGGTCTTGGAAATGTTCTCAATCAATCTACACGTTCTATTATTAG
TTTTAACAAATTACCAAGATAACTGCTTTTGCAGCATTCTTTGTAATGCC
AAATTTAAGATGGACTGAAATTAataattgagttttaaaaagaaatcatt
tgcTAAAAGAAAACTATTCAAATAATTGATAACCAAATATGAGGCACTAT
TCCTATCACTGTTATCCAACTTGTTAGATTGTCAtactttgaaattaaat
ttcctcTATTTAGCTTATTTAATTTCTTACTTAGACAACATTTCAGAGGA
GCCGTGCTTTCAATATGTGAGAGGACCTGGAATATTAGTTGAAAATTN Run BLAST on NCBI transcript from alignment at sc0002055:20436..23692- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039275 ID=TCONS_00039275|Name=TCONS_00039275|organism=Clytia hemisphaerica|type=transcript|length=3257bp|location=Sequence derived from alignment at sc0002055:20436..23692- (Clytia hemisphaerica)
CAAATCAATACCAAGCTACAGTTTATTTATATACCAAAGACATGAAGTTA
GATAACTTATGATGAGAAATAATTTGAGAAAGTTTGTCTTTGTTTTTCTC
TTCATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTAACTTCAAAGATG
TTCGGTTTTTTTGGGTGAAACCTGGGGTAGTTTTTGTTTTAACCAATAGG
TTTACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGG
TTTACAGTTTCTCAGGCTTTGTCATTTCAAAATTCCAGAATCATTCCAAA
ATTGCACTCCTAAAAAGTACTTTAGGCATGTGATGAGGAGTGCTACGAAT
AACTTTAGTAGTAGAATCTAAATGGCCTGTGTTTGATTTCACTCCTCAAG
AATTTTAGGTGTGTGTGAATCGTTAATTCAAACAACTGCGACCCAAGTTT
TTCTTTATACATACCATAGATACAACAGAACATAAATTTATCTTTAAAAA
GCTCTAAACACTAAAATAAAATCCTCCAAAAGCCAAAGCAAGTGTGGAAA
CACATAAATCCTTCCTCTCGCTAAGGTTGTCATCTTGGTTTGAAAATGTT
TAAATCAAAATGTCTCATGGATTTCAGCGAATGGCAACATTTAGTGGGAA
AGAGGATTTGCTGACTATTAAGCAGCCTCTTAAGCAGCCTCTATAAGAAA
CTTTTTCGTTAAACGATGAGCAGAAGCCTAGAGACTTCCAAAGACTTAAN
TAAGAAACTTTTTCGTTAAACGATGAGCAGAAGCCTAGAGACTTCCAAAG
ACTTAAAGGGGAGTCTTTTATTTTCAATTTCCTAAAGGGGGTTACCACTT
AACAGGGAGGATTCCCATAAATATCTGTTCTCATGATAATACTTGAAAAT
AGTATTTCTTAACCAGTACTATTGAATTATTTCCCCTTGATAATGATATT
GTCAAACCTTTTTTAACAATAAGCTTGTCATTCAAGGCTTCAGGGGACTG
AACAAAAAAAATTTATGGAAGTTTTTATGGGTGTTTTTGAGGAGATGTAA
ATCTGAACCTTTTCAGTCTTGAACCCAAAAATTCAAACCTTCAGACAGAC
AGGAAATNCTTTTATTTTCAATTTCCTAAAGGGGGTTACCACTTAACAGG
GGGGATTCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAGTATA
TCTCAACCAGTGAATTATTTCCCCTTGATAATGATATTGTCTAACCTTTT
TAACAATAAGCTTGTCATTCAAGGCTTCAGGGGACTGAACAAAAAAAATT
TAAGGAAGTTTTATGGGTGTTTTTGAGGAGATGTAAATCTGAACCTTTTC
CCAAAAANAACAAAAAAATTTAAGGAAGTTTTTATGGGTGTTTTTGAGGA
GATGTAAATCTGAACCTTTTCCCAAAAATTCAAACCTTCAGACAGACAGG
AAATCTAGTATTATTATTCTGGAAAGATGATTCAAGTTCTTGTTGTTTTT
GTTTTGATTTTTTTGTTTACTCATGAGGTCTTGGAAATGTTCTCAATCTA
CACGTTCTATTATTAGTTTTAACAAATTACCAAGATAACTGCTTTTGCTG
CATTCTTTGTAATGCCAAATTTAAGATGGACTGAAATTAATAATTGAGTT
TTAGAGGGCACATTGCTATACATTGTAATTGAGTTTTAAAAAGAAATCAT
TTGCTAAAAGAAAACTATTCGAATAATTGATAACCAAATATGAGGCACTA
TTCCTATCACTGTTATCCAACTTGTCAGATTTTCATACTTTGAAATTGAA
TTTCCTCTATTTAGCTTATTTAATTTCTTACTTAGACAACATTTCAGAGG
AGCCGTGCTTTCAATATGTAAGAGGACCTGGAATATTAGTTGGAAATTCT
TCTTGCACTTATGGTAAATGAGAAAGTGAAAAATATGACTTATTTTAACT
GCTACTGCTTACTAGTTTGTTTTTAATTTGATTGTCTTGCCTACTTTTAA
TTGTGATTTGTTACATTCTAGTAAATTTGTGTTCCTTTGAATGAACTGCT
ATAGCATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTGATTTGTTACATTCTAGTAAATTTGTGTTCCTTT
GAATGAACTGCTATAGCATTTTTATCTACGTTTTGTTGATACAATATTTT
CAAATTGAAGAAAAAGTTCGAATCAAATATTTGTAATCTGATTATTTTTT
TTTCACTCTAGTGATCAACAAGTGATTTATTTTGATGGATAATCAGCATT
CAAAAGATGTCCAACTTGGAGAAATGGTAAAATTATTGTTTCTTGGGTTT
TAACGGAATNTTACAGTTTCTCAGGCTTTGTCATTTCAAAATTCCAGAAT
CATTCCAAAATTGCACTCCTAAAAAGTACTTTAGGCATGTGGTGAGGAGT
GCTATGAATAACTTTAGTAGTAAAATCCAAATTTATGGCCTGTGTTTGAT
CGCACTCCTCAAGAATTTCAGGTGTGTGTGAATCGTTAATTCAAACAACT
GCGACCCAAGTTTTTCTTTATACAAACCATAGATACAACAGAACATAAAT
TTATCTTTAAAAAGCTTTAAACACTAAAATAAAATCCTCCAAAAGCCAAA
GCAAGCTTGGAAACACAAAAATCCTTCCTCTCGCTAAGGGCGTCATCTTG
GTTTGAAAATGTTTAAATCAATTTGAGGAGATGTAAATCTGAACCTTTTC
AGTCTTGAACCCAAAAATTCGAACCTTCAGACAGACAGGAAATCTAGTAC
TATTATTCTGGAAAGATGATTCAAGTTCTTGTTGTTTTTGTTTTGATTTT
TTTGTTTACTCATGAGGTCTTGGAAATGTTCTCAATCAATCTACACGTTC
TATTATTAGTTTTAACAAATTACCAAGATAACTGCTTTTGCAGCATTCTT
TGTAATGCCAAATTTAAGATGGACTGAAATTAATAATTGAGTTTTAAAAA
GAAATCATTTGCTAAAAGAAAACTATTCAAATAATTGATAACCAAATATG
AGGCACTATTCCTATCACTGTTATCCAACTTGTTAGATTGTCATACTTTG
AAATTAAATTTCCTCTATTTAGCTTATTTAATTTCTTACTTAGACAACAT
TTCAGAGGAGCCGTGCTTTCAATATGTGAGAGGACCTGGAATATTAGTTG
AAAATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039275-exon-sc0002055-1575043694:23494..23692 | TCONS_00039275-exon-sc0002055-1575043694:23494..23692 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1575043694:23378..23393 | TCONS_00039275-exon-sc0002055-1575043694:23378..23393 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1575043694:20436..21268 | TCONS_00039275-exon-sc0002055-1575043694:20436..21268 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1510915933:23494..23692 | TCONS_00039275-exon-sc0002055-1510915933:23494..23692 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1510915933:23378..23393 | TCONS_00039275-exon-sc0002055-1510915933:23378..23393 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1510915933:20436..21268 | TCONS_00039275-exon-sc0002055-1510915933:20436..21268 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1491911889:23494..23692 | TCONS_00039275-exon-sc0002055-1491911889:23494..23692 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1491911889:23378..23393 | TCONS_00039275-exon-sc0002055-1491911889:23378..23393 | Clytia hemisphaerica | exon |
| TCONS_00039275-exon-sc0002055-1491911889:20436..21268 | TCONS_00039275-exon-sc0002055-1491911889:20436..21268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002055 | supercontig | sc0002055:20436..23692 - |
Blast
The following BLAST results are available for this feature:
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