TCONS_00039274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039274
Unique NameTCONS_00039274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039274 ID=TCONS_00039274|Name=TCONS_00039274|organism=Clytia hemisphaerica|type=transcript|length=2107bp
agaaactttttcgttaaacgatgagcagaagcctagagaCTTCCAAAGAC
TTAAAGGGGagtcttttattttcaatttcctaAAGGGGGTTACCACTTAA
CAGGGAGGATTCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAG
TATTTCTTAACCAGTACTATTGAATTATTTCCCCTTGATAATGATATTGT
CAAACCTTTTTTAACAATAAGCTTGTCATTCAAGGCTTCAGGGgactgaa
caaaaaaaatttatggaaGTTTTTATGGGTGTTTTTGAGGAGATGTAAAT
CTGAACCTTTTCAGTCTTGAACCCAAAAATTCAAACCTTCAGACAGACAG
GAAATNcttttattttcaatttcctaAAGGGGGTTACCACTTAACAGGGG
GGATTCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAGTATATC
TCAACCAGTGAATTATTTCCCCTTGATAATGATATTGTCTAACCTTTTTA
ACAATAAGCTTGTCATTCAAGGCTTCAGGGgactgaacaaaaaaaattta
aggaaGTTTTATGGGTGTTTTTGAGGAGATGTAAATCTGAACCTTTTCCC
AAAAANaacaaaaaaatttaaggaAGTTTTTATGGGTGTTTTTGAGGAGA
TGTAAATCTGAACCTTTTCCCAAAAATTCAAACCTTCAGACAGACAGGAA
ATCTAGTATTATTATTCTGGAAAGATGATTCAAgttcttgttgtttttgt
tttgatttttttgtttactcatgAGGTCTTGGAAATGTTCTCAATCTACA
CGTTCTATTATTAGTTTTAACAAATTACCAAGATAACTGCTTTTGCTGCA
TTCTTTGTAATGCCAAATTTAAGATGGACTGAAATTAATAATTGAGTTTt
agagggcacattgctatacattgtaattgagttttaaaaagaaatcattt
gcTAAAAGAAAACTATTCGAATAATTGATAACCAAATATGAGGCACTATT
CCTATCACTGTTATCCAACTTGTCAGATTTTCATACTTTGAAATTGAATT
TCCTCTATTTAGCTTATTTAATTTCTTACTTAGACAACATTTCAGAGGAG
CCGTGCTTTCAATATGTAAGAGGACCTGGAATATTAGTTGGAAATTCTTC
TTGCACTTATGTGATCAACAAGTGATTTATTTTGATGGATAATCAGCATT
CAAAAGATGTCCAACTTGGAGAAATGGTAAAATTATTGTTTCTTGGGTTT
TAACGGAATNTTACAGTTTCTCAGGCTTtgtcatttcaaaattccagaat
caTTCCAAAATTGCACTcctaaaaagtactttaggcATGTGGTGAGGAGT
GCTATGAATAACTTTAGtagtaaaatccaaatttatggCCTGTGTTTGAT
CGCACTCCTCAAGAATTTCAGGTGTGTGTGAATCGTTAATTCAAACAACT
GCGACccaagtttttctttatacaaACCATAGATACAACAGAACAtaaat
ttatctttaaaaagctttaaacactaaaataaaatcctccaaAAGCCAAA
GCAAGCTTGGAAACACAAAAATCCTTCCTCTCGCTAAGGGCGTCATCTtg
gtttgaaaatgtttaaatcaaTTTGAGGAGATGTAAATCTGAACCTTTTC
AGTCTTGAACCCAAAAATTCGAACCTTCAGACAGACAGGAAATCTAGTAC
TATTATTCTGGAAAGATGATTCAAgttcttgttgtttttgttttgatttt
tttgtttactcatgAGGTCTTGGAAATGTTCTCAATCAATCTACACGTTC
TATTATTAGTTTTAACAAATTACCAAGATAACTGCTTTTGCAGCATTCTT
TGTAATGCCAAATTTAAGATGGACTGAAATTAataattgagttttaaaaa
gaaatcatttgcTAAAAGAAAACTATTCAAATAATTGATAACCAAATATG
AGGCACTATTCCTATCACTGTTATCCAACTTGTTAGATTGTCAtactttg
aaattaaatttcctcTATTTAGCTTATTTAATTTCTTACTTAGACAACAT
TTCAGAGGAGCCGTGCTTTCAATATGTGAGAGGACCTGGAATATTAGTTG
AAAATTN
Run BLAST on NCBI

transcript from alignment at sc0002055:20436..22890-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039274 ID=TCONS_00039274|Name=TCONS_00039274|organism=Clytia hemisphaerica|type=transcript|length=2455bp|location=Sequence derived from alignment at sc0002055:20436..22890- (Clytia hemisphaerica)
AGAAACTTTTTCGTTAAACGATGAGCAGAAGCCTAGAGACTTCCAAAGAC
TTAAAGGGGAGTCTTTTATTTTCAATTTCCTAAAGGGGGTTACCACTTAA
CAGGGAGGATTCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAG
TATTTCTTAACCAGTACTATTGAATTATTTCCCCTTGATAATGATATTGT
CAAACCTTTTTTAACAATAAGCTTGTCATTCAAGGCTTCAGGGGACTGAA
CAAAAAAAATTTATGGAAGTTTTTATGGGTGTTTTTGAGGAGATGTAAAT
CTGAACCTTTTCAGTCTTGAACCCAAAAATTCAAACCTTCAGACAGACAG
GAAATNCTTTTATTTTCAATTTCCTAAAGGGGGTTACCACTTAACAGGGG
GGATTCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAGTATATC
TCAACCAGTGAATTATTTCCCCTTGATAATGATATTGTCTAACCTTTTTA
ACAATAAGCTTGTCATTCAAGGCTTCAGGGGACTGAACAAAAAAAATTTA
AGGAAGTTTTATGGGTGTTTTTGAGGAGATGTAAATCTGAACCTTTTCCC
AAAAANAACAAAAAAATTTAAGGAAGTTTTTATGGGTGTTTTTGAGGAGA
TGTAAATCTGAACCTTTTCCCAAAAATTCAAACCTTCAGACAGACAGGAA
ATCTAGTATTATTATTCTGGAAAGATGATTCAAGTTCTTGTTGTTTTTGT
TTTGATTTTTTTGTTTACTCATGAGGTCTTGGAAATGTTCTCAATCTACA
CGTTCTATTATTAGTTTTAACAAATTACCAAGATAACTGCTTTTGCTGCA
TTCTTTGTAATGCCAAATTTAAGATGGACTGAAATTAATAATTGAGTTTT
AGAGGGCACATTGCTATACATTGTAATTGAGTTTTAAAAAGAAATCATTT
GCTAAAAGAAAACTATTCGAATAATTGATAACCAAATATGAGGCACTATT
CCTATCACTGTTATCCAACTTGTCAGATTTTCATACTTTGAAATTGAATT
TCCTCTATTTAGCTTATTTAATTTCTTACTTAGACAACATTTCAGAGGAG
CCGTGCTTTCAATATGTAAGAGGACCTGGAATATTAGTTGGAAATTCTTC
TTGCACTTATGGTAAATGAGAAAGTGAAAAATATGACTTATTTTAACTGC
TACTGCTTACTAGTTTGTTTTTAATTTGATTGTCTTGCCTACTTTTAATT
GTGATTTGTTACATTCTAGTAAATTTGTGTTCCTTTGAATGAACTGCTAT
AGCATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTGATTTGTTACATTCTAGTAAATTTGTGTTCCTTTGA
ATGAACTGCTATAGCATTTTTATCTACGTTTTGTTGATACAATATTTTCA
AATTGAAGAAAAAGTTCGAATCAAATATTTGTAATCTGATTATTTTTTTT
TCACTCTAGTGATCAACAAGTGATTTATTTTGATGGATAATCAGCATTCA
AAAGATGTCCAACTTGGAGAAATGGTAAAATTATTGTTTCTTGGGTTTTA
ACGGAATNTTACAGTTTCTCAGGCTTTGTCATTTCAAAATTCCAGAATCA
TTCCAAAATTGCACTCCTAAAAAGTACTTTAGGCATGTGGTGAGGAGTGC
TATGAATAACTTTAGTAGTAAAATCCAAATTTATGGCCTGTGTTTGATCG
CACTCCTCAAGAATTTCAGGTGTGTGTGAATCGTTAATTCAAACAACTGC
GACCCAAGTTTTTCTTTATACAAACCATAGATACAACAGAACATAAATTT
ATCTTTAAAAAGCTTTAAACACTAAAATAAAATCCTCCAAAAGCCAAAGC
AAGCTTGGAAACACAAAAATCCTTCCTCTCGCTAAGGGCGTCATCTTGGT
TTGAAAATGTTTAAATCAATTTGAGGAGATGTAAATCTGAACCTTTTCAG
TCTTGAACCCAAAAATTCGAACCTTCAGACAGACAGGAAATCTAGTACTA
TTATTCTGGAAAGATGATTCAAGTTCTTGTTGTTTTTGTTTTGATTTTTT
TGTTTACTCATGAGGTCTTGGAAATGTTCTCAATCAATCTACACGTTCTA
TTATTAGTTTTAACAAATTACCAAGATAACTGCTTTTGCAGCATTCTTTG
TAATGCCAAATTTAAGATGGACTGAAATTAATAATTGAGTTTTAAAAAGA
AATCATTTGCTAAAAGAAAACTATTCAAATAATTGATAACCAAATATGAG
GCACTATTCCTATCACTGTTATCCAACTTGTTAGATTGTCATACTTTGAA
ATTAAATTTCCTCTATTTAGCTTATTTAATTTCTTACTTAGACAACATTT
CAGAGGAGCCGTGCTTTCAATATGTGAGAGGACCTGGAATATTAGTTGAA
AATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023659XLOC_023659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039274-exon-sc0002055-1575043694:21730..22890TCONS_00039274-exon-sc0002055-1575043694:21730..22890Clytia hemisphaericaexon
TCONS_00039274-exon-sc0002055-1575043694:20436..21381TCONS_00039274-exon-sc0002055-1575043694:20436..21381Clytia hemisphaericaexon
TCONS_00039274-exon-sc0002055-1510915933:21730..22890TCONS_00039274-exon-sc0002055-1510915933:21730..22890Clytia hemisphaericaexon
TCONS_00039274-exon-sc0002055-1510915933:20436..21381TCONS_00039274-exon-sc0002055-1510915933:20436..21381Clytia hemisphaericaexon
TCONS_00039274-exon-sc0002055-1491911889:21730..22890TCONS_00039274-exon-sc0002055-1491911889:21730..22890Clytia hemisphaericaexon
TCONS_00039274-exon-sc0002055-1491911889:20436..21381TCONS_00039274-exon-sc0002055-1491911889:20436..21381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002055supercontigsc0002055:20436..22890 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.976247	0.934755	0.872042	0.329529	0.714096	0.734364	1.32253	1.33975	0.838951	1.22105	1.41785	0.57659	0.977657	1.53367	1.42225	1.04831	1.13968	1.74253	1.25598	0.763457	1.58037	1.59901	1.42164	1.23077	0.860809	1.54191	2.22799	1.56851	2.24432	1.82791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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