TCONS_00039242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039242
Unique NameTCONS_00039242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039242 ID=TCONS_00039242|Name=TCONS_00039242|organism=Clytia hemisphaerica|type=transcript|length=620bp
NNCATGCTCCACGACACGAGCTGTTTATTTAGACATTGCTGAAGATTACG
GCTCCGACGCCTTTATTCAAATGCTTGAGCGCTTCTTTAATCGTTATGGT
GCTCCAAGCAAAGTCGTAAGTGATAATGGCTCAAACTTCACGTCAAACGC
AACGAAAGAATTCGCAAAATCGAGAATGATTCGTTGGTCGTACAACATCG
AAGCCGCCCCCTGGCAGGGTGGTATGTTTGAAAGGATGATTCAATCCACG
AAACGAATTTTGAAGAAGTCTCTACGAAAAGAGATACTAACTTATAACGA
ACTGTTAACGTTATTGAAGAgaattgaaaacattctgaacAACAGACCGT
TGACTTACGTTTACGATTCTGAAGTTGGACATCCACCATTAACGCCCAAC
CATTTCATTTACGGGCGTAAGATCGAAACAACAAACGTAAATACGGACAT
CAACGACAACGCTGACGTATTAACATGTGACAATTTAAAACGTATTTTAA
CTTTCTTCTGGCAAAAATGGAAAGTCGAATATATAACCAGCTTGCGAGAA
CGGGACTATGTTAAAAGCAAGCGTGGTATTGATACCACTATCAAAGTTGG
TGACGTTTGTTTGATCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00039242-protein

>TCONS_00039242-protein ID=TCONS_00039242-protein|Name=TCONS_00039242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
XCSTTRAVYLDIAEDYGSDAFIQMLERFFNRYGAPSKVVSDNGSNFTSNA
TKEFAKSRMIRWSYNIEAAPWQGGMFERMIQSTKRILKKSLRKEILTYNE
LLTLLKRIENILNNRPLTYVYDSEVGHPPLTPNHFIYGRKIETTNVNTDI
NDNADVLTCDNLKRILTFFWQKWKVEYITSLRERDYVKSKRGIDTTIKVG
DVCLIE
Run BLAST on NCBI

transcript from alignment at sc0002052:13032..13651

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039242 ID=TCONS_00039242|Name=TCONS_00039242|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at sc0002052:13032..13651 (Clytia hemisphaerica)
CTTCGATCAAACAAACGTCACCAACTTTGATAGTGGTATCAATACCACGC
TTGCTTTTAACATAGTCCCGTTCTCGCAAGCTGGTTATATATTCGACTTT
CCATTTTTGCCAGAAGAAAGTTAAAATACGTTTTAAATTGTCACATGTTA
ATACGTCAGCGTTGTCGTTGATGTCCGTATTTACGTTTGTTGTTTCGATC
TTACGCCCGTAAATGAAATGGTTGGGCGTTAATGGTGGATGTCCAACTTC
AGAATCGTAAACGTAAGTCAACGGTCTGTTgttcagaatgttttcaattc
TCTTCAATAACGTTAACAGTTCGTTATAAGTTAGTATCTCTTTTCGTAGA
GACTTCTTCAAAATTCGTTTCGTGGATTGAATCATCCTTTCAAACATACC
ACCCTGCCAGGGGGCGGCTTCGATGTTGTACGACCAACGAATCATTCTCG
ATTTTGCGAATTCTTTCGTTGCGTTTGACGTGAAGTTTGAGCCATTATCA
CTTACGACTTTGCTTGGAGCACCATAACGATTAAAGAAGCGCTCAAGCAT
TTGAATAAAGGCGTCGGAGCCGTAATCTTCAGCAATGTCTAAATAAACAG
CTCGTGTCGTGGAGCATGNN

Coding sequence (CDS) from alignment at sc0002052:13032..13651

>TCONS_00039242 ID=TCONS_00039242|Name=TCONS_00039242|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0002052:13032..13651 (Clytia hemisphaerica)
TTCGATCAAACAAACGTCACCAACTTTGATAGTGGTATCAATACCACGCT
TGCTTTTAACATAGTCCCGTTCTCGCAAGCTGGTTATATATTCGACTTTC
CATTTTTGCCAGAAGAAAGTTAAAATACGTTTTAAATTGTCACATGTTAA
TACGTCAGCGTTGTCGTTGATGTCCGTATTTACGTTTGTTGTTTCGATCT
TACGCCCGTAAATGAAATGGTTGGGCGTTAATGGTGGATGTCCAACTTCA
GAATCGTAAACGTAAGTCAACGGTCTGTTgttcagaatgttttcaattcT
CTTCAATAACGTTAACAGTTCGTTATAAGTTAGTATCTCTTTTCGTAGAG
ACTTCTTCAAAATTCGTTTCGTGGATTGAATCATCCTTTCAAACATACCA
CCCTGCCAGGGGGCGGCTTCGATGTTGTACGACCAACGAATCATTCTCGA
TTTTGCGAATTCTTTCGTTGCGTTTGACGTGAAGTTTGAGCCATTATCAC
TTACGACTTTGCTTGGAGCACCATAACGATTAAAGAAGCGCTCAAGCATT
TGAATAAAGGCGTCGGAGCCGTAATCTTCAGCAATGTCTAAATAAACAGC
TCGTGTCGTGGAGCATGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023649XLOC_023649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039242-proteinTCONS_00039242-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039242-exon-sc0002052-1491911889:13032..13651TCONS_00039242-exon-sc0002052-1491911889:13032..13651Clytia hemisphaericaexon
TCONS_00039242-exon-sc0002052-1510915933:13032..13651TCONS_00039242-exon-sc0002052-1510915933:13032..13651Clytia hemisphaericaexon
TCONS_00039242-exon-sc0002052-1575043694:13032..13651TCONS_00039242-exon-sc0002052-1575043694:13032..13651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002052supercontigsc0002052:13032..13651 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.11416	1.53453	1.10592	0.314313	1.04767	0.551923	2.21957	1.66235	1.23659	2.79313	2.92286	2.67845	4.99605	3.72986	8.24269	9.55869	4.72756	7.51209	3.03259	2.03904	3.20571	2.40047	2.4	2.67795	3.42911	4.63195	0.729687	0.135399	1.07074	1.30187
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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