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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039237 ID=TCONS_00039237|Name=TCONS_00039237|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GTGGATATTTCGCTTTAAGAGAGAGCCATGAGGTAGCGGAAACACTAACA
GCTGAATGGTGGCATAACTCAAAAGAAATCTTAGatgtctattgtatttt
ttcttttcgaactttggacccttaccgggactaaaaaagaaaaaaacaaa
atgttgggaattttacgacccttagcgggacaaatttgaccgattttgac
caaattttgatcttttcgTGGATGGTTTGACGTTGCCCCCAAATTTGGGC
TGCATAATAGGCGTGACATTGGAAGAGAGAAAAGTACAATGATATTAATG
TTTTcttgtcgacataatgccgaAGTTTACTTAGAGCTCCATTAGCTCGT
TTTAATTTATTACAgacctcattgttcttataaaaaaattgtattacatG
TACATCTTGTTTTGTCATTTTCATACtttctaaattatttttaaatttct
tccttgagttttctAATCAAATAGACATACATATCCTTAAtgtgtgaaat
caagtgcgtattactCAGTTCTCTCAAAGTTAGCGAGTTGGTTGGAGATT
GGACACTGGCTGTGTCTCAGTTCGTAGCAATTCCATTGATTCGTAGGATT
CAGGTACCAGATGGTGAACATTGAGCACGTCGCTCGTGTCGTCTACTACG
AACTAGTGTAATAGCAACGAACCGATAGCACAGTTGGGAGAGCGATCGCC
cggcaagcgagaggtcgtgggtttaattcccactcgattcgttacctttg
agaaaactgggaagtacattagtgcaggatccgttgatccATATTCTTAA
TCGTTTTAATATACCTTTATTTTCATCATATCAGTAAGATCTTTGACTTA
TCTTAAcattattacaattttttttgtcttttttaatcGTTTAAAAACAA
TATTATAAGGTaataatttatatattttcGTAACATAATGCTTACAGCAA
TCGTGTCAACTCaacaactacacgtttttttttataagaacgtcaaaaat
tttcgaagccttcggatgttcttagttttttggatttgaagc Run BLAST on NCBI transcript from alignment at sc0002050:14436..16794+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039237 ID=TCONS_00039237|Name=TCONS_00039237|organism=Clytia hemisphaerica|type=transcript|length=2359bp|location=Sequence derived from alignment at sc0002050:14436..16794+ (Clytia hemisphaerica)
GTGGATATTTCGCTTTAAGAGAGAGGTATAGTTTCAATTGaatacacgct
tcttttttttataagaatacactttataaaaatgtccatgatgaaaatgg
ccaaaaagttaagaatatgctaagaataccaccacaaaatctagtctgaa
ttaggatcctaacctaagaatgctgtaagaatattttaggatgattttcc
caaaaaagttaagaatatccatgatgaaatggatttacaccNgttatcaa
taatgtttttgtgtgaaaaacatagaaatataaggaaaaaatccaatgaa
aatctgcaaaaacggtgatttccggcattttccgccggaaaaattttttc
ctcaaaaatcggactcggtcatgttttgggcattgttaatacgcatcttt
gagcaaaaaatctgaaaaaactaatgataaaatctcgagaaaatgccaaa
aaaacagtttttccggcatatttccgacattttcggccggaaataaatta
ttttcgaaaatcaggctccgtcacattttagctattgtcatattgcatca
gtgtgcaaaatttcctaaaaatatataaaagtacagctcaagaaattcaa
gaaataccgtttttccggcgaaaatcggctgttccggcgatttttagaaa
gttccggcttcaaaaatcaattttaTTGAAAATTGAAACATGCTTGATGG
TGGGCATTGCTATTAATAATatttttgaatgaaaatacaaccaattataa
ggaaaaagtccaatgaaaatccagaaaaacggcgatttccggcatatttc
cggcattttcggccggaaaaaattttttctcaaaaatcggactaggccat
gttttgggcattgctaatacgcatctttgagcaaaaaatcagaaaaaact
aatgataaaatctcgagaaaatgccaaaaaaacagattttccggcatatt
tccggcattttcggccggaaaaagtTCTTTTGGTATAaagtgttaaaagt
ttttctggTATAAAATATTTAAAGTTTTCTTGGTATAACgtttaaggttt
tatttttctatttctttttcttattaGTGCTCAGGAACCATGTTTCTTAT
ATTATCTTATAATATCTTATATTATCTTATGTTATGAACCTTAGCCATGA
GGTAGCGGAAACACTAACAGCTGAATGGTGGCATAACTCAAAAGAAATCT
TAGGTATTTGAATATATACTGTGAGAGTATTCATGTCTTACCgtcttcat
tttcgaaatttgTTGGTGTTGGGGGTAGCGTTAGCTATTTTGTGTTTAAA
ATCTTGAGTTGAAAATTAttgatttgaaagttttgagtattttaaaattc
ttgGGGTTTTATTTACATTCCAATTTTAttgtctcaatttttttatttta
gatgtctattgtattttttcttttcgaactttggacccttaccgggacta
aaaaagaaaaaaacaaaatgttgggaattttacgacccttagcgggacaa
atttgaccgattttgaccaaattttgatcttttcgTGGATGGTTTGACGT
TGCCCCCAAATTTGGGCTGCATAATAGGCGTGACATTGGAAGAGAGAAAA
GTACAATGATATTAATGTTTTcttgtcgacataatgccgaAGTTTACTTA
GAGCTCCATTAGCTCGTTTTAATTTATTACAgacctcattgttcttataa
aaaaattgtattacatGTACATCTTGTTTTGTCATTTTCATACtttctaa
attatttttaaatttcttccttgagttttctAATCAAATAGACATACATA
TCCTTAAtgtgtgaaatcaagtgcgtattactCAGTTCTCTCAAAGTTAG
CGAGTTGGTTGGAGATTGGACACTGGCTGTGTCTCAGTTCGTAGCAATTC
CATTGATTCGTAGGATTCAGGTACCAGATGGTGAACATTGAGCACGTCGC
TCGTGTCGTCTACTACGAACTAGTGTAATAGCAACGAACCGATAGCACAG
TTGGGAGAGCGATCGCCcggcaagcgagaggtcgtgggtttaattcccac
tcgattcgttacctttgagaaaactgggaagtacattagtgcaggatccg
ttgatccATATTCTTAATCGTTTTAATATACCTTTATTTTCATCATATCA
GTAAGATCTTTGACTTATCTTAAcattattacaattttttttgtcttttt
taatcGTTTAAAAACAATATTATAAGGTaataatttatatattttcGTAA
CATAATGCTTACAGCAATCGTGTCAACTCaacaactacacgttttttttt
ataagaacgtcaaaaattttcgaagccttcggatgttcttagttttttgg
atttgaagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039237-exon-sc0002050-1491911889:14436..14460 | TCONS_00039237-exon-sc0002050-1491911889:14436..14460 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1510915933:14436..14460 | TCONS_00039237-exon-sc0002050-1510915933:14436..14460 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1575043694:14436..14460 | TCONS_00039237-exon-sc0002050-1575043694:14436..14460 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1491911889:15580..15638 | TCONS_00039237-exon-sc0002050-1491911889:15580..15638 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1510915933:15580..15638 | TCONS_00039237-exon-sc0002050-1510915933:15580..15638 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1575043694:15580..15638 | TCONS_00039237-exon-sc0002050-1575043694:15580..15638 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1491911889:15837..16794 | TCONS_00039237-exon-sc0002050-1491911889:15837..16794 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1510915933:15837..16794 | TCONS_00039237-exon-sc0002050-1510915933:15837..16794 | Clytia hemisphaerica | exon |
| TCONS_00039237-exon-sc0002050-1575043694:15837..16794 | TCONS_00039237-exon-sc0002050-1575043694:15837..16794 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002050 | supercontig | sc0002050:14436..16794 + |
Blast
The following BLAST results are available for this feature:
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