TCONS_00039229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039229
Unique NameTCONS_00039229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039229 ID=TCONS_00039229|Name=TCONS_00039229|organism=Clytia hemisphaerica|type=transcript|length=488bp
cggcaggaactgacggaccagagacgacaggaactgacggaccagagacg
acaggaactgatagaccagagacgacaggaactgatagACCAGAGACGgc
aggaactgacggaccagagacgacaggaactgatagaccagagacgacag
gaactgatgGACCAGAAGTGGCAACAATTGAAGGTTCAAAAGAGGCAACA
ATTGATGGTTTAGAAGAGATAGATGTGTGATGTTTAggagaaaaaactaa
attttgaacAACAGCCGGTATAATTGGCTGGGATTCCTTCTCTACACTGA
CATGATTCTTAGATTGTTGCATTTCATTTGGTAATCCTGTTGATGTTTCT
tgtcctgaaaaatgaaaagaatccCACCCATGGACCTCTAGGGGGTACAG
CAGTTCAAGGGGACGTTTGACCTTATGTTTGCCTTCAATGCCGAAACTAA
TCAAGGCTCCTCGAACAACATTTTTCCttccaaaaatt
Run BLAST on NCBI

protein sequence of TCONS_00039229-protein

>TCONS_00039229-protein ID=TCONS_00039229-protein|Name=TCONS_00039229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
IFGRKNVVRGALISFGIEGKHKVKRPLELLYPLEVHGWDSFHFSGQETST
GLPNEMQQSKNHVSVEKESQPIIPAVVQNLVFSPKHHTSISSKPSIVASF
EPSIVATSGPSVPVVSGLSVPVVSGPSVPAVSGLSVPVVSGLSVPVVSGP
SVPVVSGPSVPA
Run BLAST on NCBI

transcript from alignment at sc0002049:11285..11772

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039229 ID=TCONS_00039229|Name=TCONS_00039229|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0002049:11285..11772 (Clytia hemisphaerica)
aatttttggaaGGAAAAATGTTGTTCGAGGAGCCTTGATTAGTTTCGGCA
TTGAAGGCAAACATAAGGTCAAACGTCCCCTTGAACTGCTGTACCCCCTA
GAGGTCCATGGGTGggattcttttcatttttcaggacaAGAAACATCAAC
AGGATTACCAAATGAAATGCAACAATCTAAGAATCATGTCAGTGTAGAGA
AGGAATCCCAGCCAATTATACCGGCTGTTgttcaaaatttagttttttct
ccTAAACATCACACATCTATCTCTTCTAAACCATCAATTGTTGCCTCTTT
TGAACCTTCAATTGTTGCCACTTCTGGTCcatcagttcctgtcgtctctg
gtctatcagttcctgtcgtctctggtccgtcagttcctgcCGTCTCTGGT
ctatcagttcctgtcgtctctggtctatcagttcctgtcgtctctggtcc
gtcagttcctgtcgtctctggtccgtcagttcctgccg

Coding sequence (CDS) from alignment at sc0002049:11285..11772

>TCONS_00039229 ID=TCONS_00039229|Name=TCONS_00039229|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0002049:11285..11772 (Clytia hemisphaerica)
atttttggaaGGAAAAATGTTGTTCGAGGAGCCTTGATTAGTTTCGGCAT
TGAAGGCAAACATAAGGTCAAACGTCCCCTTGAACTGCTGTACCCCCTAG
AGGTCCATGGGTGggattcttttcatttttcaggacaAGAAACATCAACA
GGATTACCAAATGAAATGCAACAATCTAAGAATCATGTCAGTGTAGAGAA
GGAATCCCAGCCAATTATACCGGCTGTTgttcaaaatttagttttttctc
cTAAACATCACACATCTATCTCTTCTAAACCATCAATTGTTGCCTCTTTT
GAACCTTCAATTGTTGCCACTTCTGGTCcatcagttcctgtcgtctctgg
tctatcagttcctgtcgtctctggtccgtcagttcctgcCGTCTCTGGTc
tatcagttcctgtcgtctctggtctatcagttcctgtcgtctctggtccg
tcagttcctgtcgtctctggtccgtcagttcctgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023639XLOC_023639Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039229-proteinTCONS_00039229-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039229-exon-sc0002049-1491911889:11285..11772TCONS_00039229-exon-sc0002049-1491911889:11285..11772Clytia hemisphaericaexon
TCONS_00039229-exon-sc0002049-1510915933:11285..11772TCONS_00039229-exon-sc0002049-1510915933:11285..11772Clytia hemisphaericaexon
TCONS_00039229-exon-sc0002049-1575043694:11285..11772TCONS_00039229-exon-sc0002049-1575043694:11285..11772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002049supercontigsc0002049:11285..11772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.68765	2.68555	2.55331	1.49237	603.904	467.985	325.935	390.772	88.1799	149.428	63.9147	62.0289	10.4284	9.7873	10.2319	14.4019	33.3129	37.7679	7.52064	9.4254	17.4583	22.4379	7.09871	6.4951	12.6715	11.6265	4.01033	4.19925	2.34214	2.58835
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top