TCONS_00039228 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039228
Unique Name	TCONS_00039228
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1813

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002049:18761..22571-
coding sequence from alignment at sc0002049:18761..22571-

transcript sequence

>TCONS_00039228 ID=TCONS_00039228|Name=TCONS_00039228|organism=Clytia hemisphaerica|type=transcript|length=1813bp
GTTCcagttaaagagacattcgagttatagagattcgagttaaagagatt
ccactgtatttgatgaattttaattttaaccCGATATAATATCAATAACG
CCTATTTTATCTTTTTCCTTCATCATcagggaaaaatcaaaatataatat
agccgcattctttttcaccgttcaacacatTATATTCTTCCTTTCATAGG
TATAACGGAGATATAACAAGAGAttcaaaagatttaaaaacaaacaagat
ACGAAACAGAAAACAACGAGACCCTACAACGATGTGCAATACTAAACCAA
AAAGTGAGACCACgacaacaacaaacaacaatacACAAAATCTTGATGAC
TTCCAACGTCAACTGTTAGAATCGCACAACAAACGCCGCCATGAGCACGG
CGTATCACCTTTAGAATGGGATAACACGCTAGCAGCTGAGGCTCAAGCAT
GGGCTGACAAACTGGCCAGAGAAGAGAATCTTTATCATTCCTCTGTTGAT
GTCAGACATCATCTCggagaaaatttggcaaataaTAACAGGAAAATATT
CACAGGTGAAGATGCAACAGAACAGTGGTATGGAGAGATAAAAAATTTCG
ATTATGAGCATTCAGATCATTTTGAAGTTCAGACAGGACATTTTACACAA
GTTGTGTGGAAACATTCAAAGAAAGTTGGAGCTGCTATGGCAACCAGCCA
ATCAGGAAAACATTACGTGTGTGCAAGATATGACCCACCAGGAAACATGC
GAGGTGTTTTCGAACGAAATCTTCAGTTGATGGAGGACGTTGAAGAAGAA
GTTGTGGAAGAAGATGGTACAGTCGAACGAAAAATGGTCAAACGTCTTAA
GAGAAGATTAAATGATCCATTGAAAGATAAAACCTTAGgTGTCATTCAGC
ATTCAAACACATTGGAGATAGAAGATGAAGGAAGAGTTTCATTTGACCAC
GTGTACGAGGAAGCGAAAGAGACCGGAGTTGACGATGGTCTTTTACGACA
AACAGCGAGCGTGAACACAAAAGGTGCACCACCCAAACGCACACAACCAG
CATACGCCGACAATGATTATTTTAAGCCTGGTAAAAATTATTCGGTTACT
CATAACATCTATGGCTTTTGAATGAATTCTTGTGTTGGAGATCAATAATA
ACTGTGAAAGATTggattgtaaatattttatcGGTGGTTTTAACAAATAT
GATTGGTTCGTCAATTCATGATATGGACCATTGCAATgacttctgacatt
acatcacggacccaaaagctgattggttgtaagtggggtaaaatcagtca
atacgtcacacgttacaaccaatcagctgctgGANTTGTAAGTGgggtaa
aatcagtcaatacgtcacacgttacaaccaatcagctgttggatccgtgg
aagacattgcaatggtgcataccaTGAATTTCACGAAAGAAAGATTGAAG
GTCAAAACGAGATTTAAAATCTATGCAAAGAAGACAGGTGTCAATAATGA
TGACCATCCTTTCCATAACTGCTGGAAAGAAGTGGAGGAAAGTGTACATA
AAGAATAGCTTATAACGCTAGAACTTAAGCAAATTCGAATGGGCGCTTGT
ATCTGAGATGGAACAGAATTTTTAAGTTCAATAAATATTATACGTTGTAG
TATTTTAAGACATCAtgtttttcaaatatatattcttACAATCATTATTG
ATATCAACTTGTCAATCTTTATATACCTTGAAAATTCTTAGGACAAACAA
AATCAGTTACTTTTCATCGAAGAGAACGAGAGTAAATGAACCAAATTATG
ACATTCACTGTAC

Run BLAST on NCBI

protein sequence of TCONS_00039228-protein

>TCONS_00039228-protein ID=TCONS_00039228-protein|Name=TCONS_00039228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MCNTKPKSETTTTTNNNTQNLDDFQRQLLESHNKRRHEHGVSPLEWDNTL
AAEAQAWADKLAREENLYHSSVDVRHHLGENLANNNRKIFTGEDATEQWY
GEIKNFDYEHSDHFEVQTGHFTQVVWKHSKKVGAAMATSQSGKHYVCARY
DPPGNMRGVFERNLQLMEDVEEEVVEEDGTVERKMVKRLKRRLNDPLKDK
TLGVIQHSNTLEIEDEGRVSFDHVYEEAKETGVDDGLLRQTASVNTKGAP
PKRTQPAYADNDYFKPGKNYSVTHNIYGF

Run BLAST on NCBI

transcript from alignment at sc0002049:18761..22571-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039228 ID=TCONS_00039228|Name=TCONS_00039228|organism=Clytia hemisphaerica|type=transcript|length=3811bp|location=Sequence derived from alignment at sc0002049:18761..22571- (Clytia hemisphaerica)
GTTCCAGTTAAAGAGACATTCGAGTTATAGAGATTCGAGTTAAAGAGATT
CCACTGTATTTGATGAATTTTAATTTTAACCCGATATAATATCAATAACG
CCTATTTTATCTTTTTCCTTCATCATCAGGGAAAAATCAAAATATAATAT
AGCCGCATTCTTTTTCACCGTTCAACACATTATATTCTTCCTTTCATAGG
TATAACGGAGATATAACAAGAGATTCAAAAGATTTAAAAACAAACAAGAT
ACGAAACAGAAAACAACGAGACCCTACAACGATGTGCAATACTAAACCAA
AAAGTGAGACCACGACAACAACAAACAACAATACACAAAATCTTGATGAC
TTCCAACGTCAACTGTTAGAATCGCACAACAAACGCCGCCATGAGCACGG
CGTATCACCTTTAGAATGGGATAACACGCTAGCAGCTGAGGCTCAAGCAT
GGGCTGACAAACTGGCCAGAGAAGAGAATCTTTATCATTCCTCTGTTGAT
GTCAGACATCATCTCGGAGAAAATTTGGCAAATAATAACAGTAAGTTGCT
ATTTTGTTTTCATAAGTGTTTAGGTATAGGTGTCATCTTGGTCATAATAG
AGAAATCTAATGGCAGAGATGCTTTCTACACTATACACTGCACAATCTTG
TGAGGGGGCTTGTGAAGATCTGTGGAAAAAGCTCCACCGCGGTTGTGAGA
CAGGGGTGTGATAAATGTCTCAAAATAAAGTTGCTGATTAAATTACGTAT
GTGAAGGCCGAAGGTTGATTGCAAATTACTAAGTATGTATTGTATAGAAA
ATAACTTTTTCACTTCGAATATTTAGTGGTGTAATTCATACTCTGTTTCT
CTTGATATTTTCAGGGAAAATATTCACAGGTGAAGATGCAACAGAACAGT
GGTATGGAGAGATAAAAAATTTCGATTATGAGCATTCAGATCATTTTGAA
GTTCAGACAGGACATTTTACACAAGTTGTGTGGAAACATTCAAAGAAAGT
TGGAGCTGCTATGGCAACCAGCCAATCAGGTTGGTTTCTACGTTTTTTGC
TGAGAAAACATTTTTGGCTCTTAAATATTGCAACATATTTCCCACTCTAG
AGCCCTTATTATTGACTTAATAAAGGCGATCGGCTGAAAAAAACCCATTC
AAGTTGTCTTCAGCTGAATTGGCGTCGACCTATATTCATTTAAAAACTTT
TTAGACTTTTGGTGGATTCTTGCTGGAACTCAATTGACCAACCAGGCCCT
TTTTTCGATATTTCAAGAAGCGTGACTTGAAAACATTGGCGATAGTACAC
AAACATATTTCATATTTTGACGTTTCTTCGAGAGTCACTCTCTCGCTCAA
AGAATACTCCCAATGATGCAAACTTCATCTTTGTTTTGGAATTTTCACAG
GAAAACATTACGTGTGTGCAAGATATGACCCACCAGGAAACATGCGAGGT
GTTTTCGAACGAAATCTTCAGTTGATGGAGGACGTTGAAGAAGAAGTTGT
GGAAGAAGATGGTACAGTCGAACGAAAAATGGTCAAACGTCTTAAGAGAA
GATTAAATGATCCATTGAAAGATAAAACCTTAGGTAAGTGTGGATTTTTA
ATAGAGGTTATTAAGAATAGCAAAAAAGCAAAAAGGTACTTAGGTTTGAG
AATGTTGCACAAAATTATATGCGAACCGATCCCCCAAGCCCTGACCCTTC
CTACCCAGCTAGAACTCAATGTTGTTTCAACGTTCATCTAACATTATAGG
ACGTTGTGAACGTTAGACAAACGTTAAAACAACACCCGAAACAACGTTTT
GTGCCAGCAGGGTATAGAAAGAATTAAATTTCGACGAAAAGGATCCAAAA
GAGAATTTTGAAAAGATTTCCTTCTTCGAAAGACTTTTTCGTCTTCATAA
TTTCAAAGAAGTTTTTGAAAAAAATAACTATGGTGGTTAAGATTCGATAG
TTTAAATGATCTGACTCAAAATGAAACAAATCTTATTTTTTAGGTGTCAT
TCAGCATTCAAACACATTGGAGATAGAAGATGAAGGAAGAGTTTCATTTG
ACCACGTGTACGAGGAAGCGAAAGAGACCGGAGGTATTTTTGAATATATA
TCTATGATATAGGATGCACAAACAAAAATGTAAAACACTAAGGGTTTCTT
ACCTCCCGCAAAAAGACCACTACAATCATGGTCAAAACTGGTGTCGATGA
CCCTTTTCCACCGGCAAGTCCCCCCTCTCCCACCAAAATCAATGTTGGAG
TTGAATTTTTGCACGTTCACAAGACTTGCCATCAACATTGATATTGGGGA
AGGGGGTAGACAAACAGTTCTGTCCAGGATTGTAGATCATACCGTCAGGA
AGAAGGAACCCCAGAAACACTAATAAAATGAGCAATAATAATTAATAGAT
GAATTTAAAGGAAGCGGGTATAAAAACATACACCAAGAACAAAAGTTCAA
TAGTTCCTTAGTCAACCCGGGAGAAAGGGGTACTAGGGTGTTGAAGAATT
TCGTAGTATGTGTGGACCGAAACTCCGGAAAATCTCAGAGCAAATTATCC
CAAGAGAGAATTTTTTTACTTTTTGTTGTTTTTGTAACATTCGAGTTAAT
GCATAACATAAACACCGCATATTCCAGTAAGACACCACCCTCCTATCTAG
TGACATTTCACTTCGTCTTTAATTCCTAATATTTAGATAAGTGATGAATC
TTGATGACTCTAGACTAGCAAGCGTCTGTCTTTCCTTGGACACAGGAGCG
CGGGAATAGTGCTAATAAAGAGTTCTTATAAATAAAGAGTTCTTATAAAA
AATAGAAATTTTCGCAGGAGAGTGGTTTGGAAAGACAGTTGTATTCAGCG
AACATATAAACATAGATCCCATTACAAGCTTAAGCTGCAGCGAAATACAA
CGACGTGGTTTACTAGTCTATGATGACTCGCGACCACGTCAATCCTATAA
GCTATTCATCTTCTTCAAATATTTAGTTGACGATGGTCTTTTACGACAAA
CAGCGAGCGTGAACACAAAAGGTGCACCACCCAAACGCACACAACCAGCA
TACGCCGACAATGATTATTTTAAGCCTGGTAAAAATTATTCGGTTACTCA
TAACATCTATGGCTTTTGAATGAATTCTTGTGTTGGAGATCAATAATAAC
TGTGAAAGATTGGATTGTAAATATTTTATCGGTGGTTTTAACAAATATGA
TTGGTTCGTCAATTCATGATATGGACCATTGCAATGACTTCTGACATTAC
ATCACGGACCCAAAAGCTGATTGGTTGTAAGTGGGGTAAAATCAGTCAAT
ACGTCACACGTTACAACCAATCAGCTGCTGGANTTGTAAGTGGGGTAAAA
TCAGTCAATACGTCACACGTTACAACCAATCAGCTGTTGGATCCGTGGAA
GACATTGCAATGGTGCATACCATGAATTTCACGAAAGAAAGATTGAAGGT
CAAAACGAGATTTAAAATCTATGCAAAGAAGACAGGTGTCAATAATGATG
ACCATCCTTTCCATAACTGCTGGAAAGAAGTGGAGGAAAGTGTACATAAA
GAATAGCTTATAACGCTAGAACTTAAGCAAATTCGAATGGGCGCTTGTAT
CTGAGATGGAACAGAATTTTTAAGTTCAATAAATATTATACGTTGTAGTA
TTTTAAGACATCATGTTTTTCAAATATATATTCTTACAATCATTATTGAT
ATCAACTTGTCAATCTTTATATACCTTGAAAATTCTTAGGACAAACAAAA
TCAGTTACTTTTCATCGAAGAGAACGAGAGTAAATGAACCAAATTATGAC
ATTCACTGTAC

Coding sequence (CDS) from alignment at sc0002049:18761..22571-

>TCONS_00039228 ID=TCONS_00039228|Name=TCONS_00039228|organism=Clytia hemisphaerica|type=CDS|length=4200bp|location=Sequence derived from alignment at sc0002049:18761..22571- (Clytia hemisphaerica)
TTGACGATGGTCTTTTACGACAAACAGCGAGCGTGAACACAAAAGGTGCA
CCACCCAAACGCACACAACCAGCATACGCCGACAATGATTATTTTAAGCC
TGGTAAAAATTATTCGGTTACTCATAACATCTATGGCTTTTGAGTGTCAT
TCAGCATTCAAACACATTGGAGATAGAAGATGAAGGAAGAGTTTCATTTG
ACCACGTGTACGAGGAAGCGAAAGAGACCGGAGGAAAACATTACGTGTGT
GCAAGATATGACCCACCAGGAAACATGCGAGGTGTTTTCGAACGAAATCT
TCAGTTGATGGAGGACGTTGAAGAAGAAGTTGTGGAAGAAGATGGTACAG
TCGAACGAAAAATGGTCAAACGTCTTAAGAGAAGATTAAATGATCCATTG
AAAGATAAAACCTTAGGGAAAATATTCACAGGTGAAGATGCAACAGAACA
GTGGTATGGAGAGATAAAAAATTTCGATTATGAGCATTCAGATCATTTTG
AAGTTCAGACAGGACATTTTACACAAGTTGTGTGGAAACATTCAAAGAAA
GTTGGAGCTGCTATGGCAACCAGCCAATCAGATGTGCAATACTAAACCAA
AAAGTGAGACCACGACAACAACAAACAACAATACACAAAATCTTGATGAC
TTCCAACGTCAACTGTTAGAATCGCACAACAAACGCCGCCATGAGCACGG
CGTATCACCTTTAGAATGGGATAACACGCTAGCAGCTGAGGCTCAAGCAT
GGGCTGACAAACTGGCCAGAGAAGAGAATCTTTATCATTCCTCTGTTGAT
GTCAGACATCATCTCGGAGAAAATTTGGCAAATAATAACATTGACGATGG
TCTTTTACGACAAACAGCGAGCGTGAACACAAAAGGTGCACCACCCAAAC
GCACACAACCAGCATACGCCGACAATGATTATTTTAAGCCTGGTAAAAAT
TATTCGGTTACTCATAACATCTATGGCTTTTGAGTGTCATTCAGCATTCA
AACACATTGGAGATAGAAGATGAAGGAAGAGTTTCATTTGACCACGTGTA
CGAGGAAGCGAAAGAGACCGGAGGAAAACATTACGTGTGTGCAAGATATG
ACCCACCAGGAAACATGCGAGGTGTTTTCGAACGAAATCTTCAGTTGATG
GAGGACGTTGAAGAAGAAGTTGTGGAAGAAGATGGTACAGTCGAACGAAA
AATGGTCAAACGTCTTAAGAGAAGATTAAATGATCCATTGAAAGATAAAA
CCTTAGGGAAAATATTCACAGGTGAAGATGCAACAGAACAGTGGTATGGA
GAGATAAAAAATTTCGATTATGAGCATTCAGATCATTTTGAAGTTCAGAC
AGGACATTTTACACAAGTTGTGTGGAAACATTCAAAGAAAGTTGGAGCTG
CTATGGCAACCAGCCAATCAGATGTGCAATACTAAACCAAAAAGTGAGAC
CACGACAACAACAAACAACAATACACAAAATCTTGATGACTTCCAACGTC
AACTGTTAGAATCGCACAACAAACGCCGCCATGAGCACGGCGTATCACCT
TTAGAATGGGATAACACGCTAGCAGCTGAGGCTCAAGCATGGGCTGACAA
ACTGGCCAGAGAAGAGAATCTTTATCATTCCTCTGTTGATGTCAGACATC
ATCTCGGAGAAAATTTGGCAAATAATAACATTGACGATGGTCTTTTACGA
CAAACAGCGAGCGTGAACACAAAAGGTGCACCACCCAAACGCACACAACC
AGCATACGCCGACAATGATTATTTTAAGCCTGGTAAAAATTATTCGGTTA
CTCATAACATCTATGGCTTTTGAGTGTCATTCAGCATTCAAACACATTGG
AGATAGAAGATGAAGGAAGAGTTTCATTTGACCACGTGTACGAGGAAGCG
AAAGAGACCGGAGGAAAACATTACGTGTGTGCAAGATATGACCCACCAGG
AAACATGCGAGGTGTTTTCGAACGAAATCTTCAGTTGATGGAGGACGTTG
AAGAAGAAGTTGTGGAAGAAGATGGTACAGTCGAACGAAAAATGGTCAAA
CGTCTTAAGAGAAGATTAAATGATCCATTGAAAGATAAAACCTTAGGGAA
AATATTCACAGGTGAAGATGCAACAGAACAGTGGTATGGAGAGATAAAAA
ATTTCGATTATGAGCATTCAGATCATTTTGAAGTTCAGACAGGACATTTT
ACACAAGTTGTGTGGAAACATTCAAAGAAAGTTGGAGCTGCTATGGCAAC
CAGCCAATCAGATGTGCAATACTAAACCAAAAAGTGAGACCACGACAACA
ACAAACAACAATACACAAAATCTTGATGACTTCCAACGTCAACTGTTAGA
ATCGCACAACAAACGCCGCCATGAGCACGGCGTATCACCTTTAGAATGGG
ATAACACGCTAGCAGCTGAGGCTCAAGCATGGGCTGACAAACTGGCCAGA
GAAGAGAATCTTTATCATTCCTCTGTTGATGTCAGACATCATCTCGGAGA
AAATTTGGCAAATAATAACATTGACGATGGTCTTTTACGACAAACAGCGA
GCGTGAACACAAAAGGTGCACCACCCAAACGCACACAACCAGCATACGCC
GACAATGATTATTTTAAGCCTGGTAAAAATTATTCGGTTACTCATAACAT
CTATGGCTTTTGAGTGTCATTCAGCATTCAAACACATTGGAGATAGAAGA
TGAAGGAAGAGTTTCATTTGACCACGTGTACGAGGAAGCGAAAGAGACCG
GAGGAAAACATTACGTGTGTGCAAGATATGACCCACCAGGAAACATGCGA
GGTGTTTTCGAACGAAATCTTCAGTTGATGGAGGACGTTGAAGAAGAAGT
TGTGGAAGAAGATGGTACAGTCGAACGAAAAATGGTCAAACGTCTTAAGA
GAAGATTAAATGATCCATTGAAAGATAAAACCTTAGGGAAAATATTCACA
GGTGAAGATGCAACAGAACAGTGGTATGGAGAGATAAAAAATTTCGATTA
TGAGCATTCAGATCATTTTGAAGTTCAGACAGGACATTTTACACAAGTTG
TGTGGAAACATTCAAAGAAAGTTGGAGCTGCTATGGCAACCAGCCAATCA
GATGTGCAATACTAAACCAAAAAGTGAGACCACGACAACAACAAACAACA
ATACACAAAATCTTGATGACTTCCAACGTCAACTGTTAGAATCGCACAAC
AAACGCCGCCATGAGCACGGCGTATCACCTTTAGAATGGGATAACACGCT
AGCAGCTGAGGCTCAAGCATGGGCTGACAAACTGGCCAGAGAAGAGAATC
TTTATCATTCCTCTGTTGATGTCAGACATCATCTCGGAGAAAATTTGGCA
AATAATAACATTGACGATGGTCTTTTACGACAAACAGCGAGCGTGAACAC
AAAAGGTGCACCACCCAAACGCACACAACCAGCATACGCCGACAATGATT
ATTTTAAGCCTGGTAAAAATTATTCGGTTACTCATAACATCTATGGCTTT
TGAGTGTCATTCAGCATTCAAACACATTGGAGATAGAAGATGAAGGAAGA
GTTTCATTTGACCACGTGTACGAGGAAGCGAAAGAGACCGGAGGAAAACA
TTACGTGTGTGCAAGATATGACCCACCAGGAAACATGCGAGGTGTTTTCG
AACGAAATCTTCAGTTGATGGAGGACGTTGAAGAAGAAGTTGTGGAAGAA
GATGGTACAGTCGAACGAAAAATGGTCAAACGTCTTAAGAGAAGATTAAA
TGATCCATTGAAAGATAAAACCTTAGGGAAAATATTCACAGGTGAAGATG
CAACAGAACAGTGGTATGGAGAGATAAAAAATTTCGATTATGAGCATTCA
GATCATTTTGAAGTTCAGACAGGACATTTTACACAAGTTGTGTGGAAACA
TTCAAAGAAAGTTGGAGCTGCTATGGCAACCAGCCAATCAGATGTGCAAT
ACTAAACCAAAAAGTGAGACCACGACAACAACAAACAACAATACACAAAA
TCTTGATGACTTCCAACGTCAACTGTTAGAATCGCACAACAAACGCCGCC
ATGAGCACGGCGTATCACCTTTAGAATGGGATAACACGCTAGCAGCTGAG
GCTCAAGCATGGGCTGACAAACTGGCCAGAGAAGAGAATCTTTATCATTC
CTCTGTTGATGTCAGACATCATCTCGGAGAAAATTTGGCAAATAATAACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023638	XLOC_023638	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00039228-protein	TCONS_00039228-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002049	supercontig	sc0002049:18761..22571 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0442366	0.129413	0.275478	0.294013	0.351702	0.176823	17.5343	15.6315	21.1197	16.4301	23.9851	10.7224	37.4314	28.1335	103.611	146.816	22.1335	89.9173	11.6943	19.6162	4.60286	4.7754	5.06835	6.15521	10.6507	9.31367	6.95752	2.42579	7.93617	4.60252

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001283	Allrgn_V5/Tpx1
IPR002413	V5_allergen
IPR014044	CAP_domain
IPR018244	Allrgn_V5/Tpx1_CS
IPR034113	SCP_GAPR1-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region

Blast

[Close]

BLAST of TCONS_00039228 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 5.855e-27
Identity = 58/143 (40.56%), Postives = 86/143 (60.14%), Query Frame = 3

Query:  351 FQRQLLESHNKRRHEHGVSPLEWDNTLAAEAQAWADKLAREENLYHSSVDVRHHLGENLANNNRKIFTGEDATEQWYGEIKNFDYEHSDHFEVQTGHFTQVVWKHSKKVGAAMATSQSGKHYVCARYDPPGNM--RGVFERNL 773
            F  ++L++HN+ R +HGV PL+    L  EAQ +++ LA    L HS    R   GENLA  +    TG++  ++WY EIKN++++    F   TGHFT +VWK++KK+G   A++  G  +V ARY P GN+   G FE N+
Sbjct:    9 FHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQ-TGKEVADRWYSEIKNYNFQQPG-FTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENV 149

The following BLAST results are available for this feature:

BLAST of TCONS_00039228 vs. Swiss-Prot (Human)

BLAST of TCONS_00039228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GAPR1	5.855e-27	40.56	Golgi-associated plant pathogenesis-related protei...	[more]

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TCONS_00039228 (transcript) - C. hemisphaerica