TCONS_00039214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039214
Unique NameTCONS_00039214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039214 ID=TCONS_00039214|Name=TCONS_00039214|organism=Clytia hemisphaerica|type=transcript|length=570bp
cctaaaaattttatttcatttcctttttttaatcTAGTGTTTCTAACCCA
TATTGTGATTTTGCTTGTTCCAAAGTTAATGTGCTTGGTTTTATCTAAAT
TTACTACTAAACCCCACTTGTCAAACCAgtcaaataaaatttctatataT
TCATCTAGGTGTGAGTCGTAAACTCTTTTGTACCTTTCCCATGCCCCAAG
ATCATCTGCAAACTGAGACAGTTTAGTCTTATTGTTGGTAGGTTTAGGAA
CATCAGAAACAAAAATAGAGAAAAGTATAGGTGAAAGACAGGAGCCTTGA
GGGACACctgctttcaaaacaaaagtagaAGATTTAAAATCATGATGTTG
GATAAAANCTTATTGTTGGTAGGTTTAGGAACATCAGAAACAAAAATAGA
GAAAAGTATAGGTGAAAGACAGGAGCCTTGAGGGACACctgctttcaaaa
caaaagtagaGGATTTAAAATCATGATGTTGGATAAAAGCTTTACGATTA
GATAGATAACTATGAAGAATATGAAGTAGATATTTTGGCAGACCAAGAGT
GTTTAATTTGTAAAGAAGGA
Run BLAST on NCBI

transcript from alignment at sc0002044:13042..13611

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039214 ID=TCONS_00039214|Name=TCONS_00039214|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0002044:13042..13611 (Clytia hemisphaerica)
TCCTTCTTTACAAATTAAACACTCTTGGTCTGCCAAAATATCTACTTCAT
ATTCTTCATAGTTATCTATCTAATCGTAAAGCTTTTATCCAACATCATGA
TTTTAAATCCtctacttttgttttgaaagcagGTGTCCCTCAAGGCTCCT
GTCTTTCACCTATACTTTTCTCTATTTTTGTTTCTGATGTTCCTAAACCT
ACCAACAATAAGNTTTTATCCAACATCATGATTTTAAATCTtctactttt
gttttgaaagcagGTGTCCCTCAAGGCTCCTGTCTTTCACCTATACTTTT
CTCTATTTTTGTTTCTGATGTTCCTAAACCTACCAACAATAAGACTAAAC
TGTCTCAGTTTGCAGATGATCTTGGGGCATGGGAAAGGTACAAAAGAGTT
TACGACTCACACCTAGATGAAtatatagaaattttatttgacTGGTTTGA
CAAGTGGGGTTTAGTAGTAAATTTAGATAAAACCAAGCACATTAACTTTG
GAACAAGCAAAATCACAATATGGGTTAGAAACACTAgattaaaaaaagga
aatgaaataaaatttttagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023625XLOC_023625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039214-exon-sc0002044-1491911889:13042..13611TCONS_00039214-exon-sc0002044-1491911889:13042..13611Clytia hemisphaericaexon
TCONS_00039214-exon-sc0002044-1510915933:13042..13611TCONS_00039214-exon-sc0002044-1510915933:13042..13611Clytia hemisphaericaexon
TCONS_00039214-exon-sc0002044-1575043694:13042..13611TCONS_00039214-exon-sc0002044-1575043694:13042..13611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002044supercontigsc0002044:13042..13611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294829	0	0	0.217727	0.265062	0.104728	0	0.354861	0.0828155	0	0.398268	0	0.784326	1.08604	1.45092	0.598868	0.368878	0.756177	1.0447	1.31184	3.04061	2.22466	0.67609	0.51222	0.42206	0.376678	2.56037	1.58197	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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