TCONS_00039196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039196
Unique NameTCONS_00039196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039196 ID=TCONS_00039196|Name=TCONS_00039196|organism=Clytia hemisphaerica|type=transcript|length=274bp
TTGTCTGGTAATCGACAACACCTGTTCAGAGTATCTATTTCTatgcctaa
aaatgttattgTCTGACAAGGGCCTTCTTTTTTGTCCTCTGCTAGGGGAA
TGTTCAAACTGTTACAAATCCTGTCAAATTGGTTCATTGCATGTGTACAA
ATATCTACAGATGAACCAGTGAAGAAATAATCATCCAGATAGTGTAACAT
GTCTTTAATTCCTCCTTTAACTCTGCAAATCCACTCCAAAGAGTCGGCAA
ATGTGTTGAAAATGTATGGGGAAG
Run BLAST on NCBI

transcript from alignment at sc0002038:6000..6273

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039196 ID=TCONS_00039196|Name=TCONS_00039196|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0002038:6000..6273 (Clytia hemisphaerica)
CTTCCCCATACATTTTCAACACATTTGCCGACTCTTTGGAGTGGATTTGC
AGAGTTAAAGGAGGAATTAAAGACATGTTACACTATCTGGATGATTATTT
CTTCACTGGTTCATCTGTAGATATTTGTACACATGCAATGAACCAATTTG
ACAGGATTTGTAACAGTTTGAACATTCCCCTAGCAGAGGACAAAAAAGAA
GGCCCTTGTCAGAcaataacatttttaggcatAGAAATAGATACTCTGAA
CAGGTGTTGTCGATTACCAGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023614XLOC_023614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039196-exon-sc0002038-1491911889:6000..6273TCONS_00039196-exon-sc0002038-1491911889:6000..6273Clytia hemisphaericaexon
TCONS_00039196-exon-sc0002038-1510915933:6000..6273TCONS_00039196-exon-sc0002038-1510915933:6000..6273Clytia hemisphaericaexon
TCONS_00039196-exon-sc0002038-1575043694:6000..6273TCONS_00039196-exon-sc0002038-1575043694:6000..6273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:6000..6273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.47565	8.33245	2.47846	1.18721	33.0386	25.7899	27.9313	41.055	22.8062	7.8515	17.1449	13.378	19.1158	28.3803	20.9974	16.2522	18.6751	28.8874	17.1831	14.9388	12.3645	15.0866	7.60797	11.7864	118.391	73.942	4.42853	3.21754	8.91412	5.70897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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