TCONS_00039195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039195
Unique NameTCONS_00039195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039195 ID=TCONS_00039195|Name=TCONS_00039195|organism=Clytia hemisphaerica|type=transcript|length=507bp
AACTTACATCAGCTGAAGCGCACAACATGATGAACATCAATGCTGATGAT
TGTGGCTACGATGATGACAGTTCTATATTTGATACCACACGCCCATATGT
TGAACCTAAACCATTATGTAATGGAGTCAATTTATCTCTTGAGAACTCAA
TGCTTCTTCACATGGTGTTTGCAAGAAGACACAATTTGACAAAGGCAGCA
CTGAGAGATCTCCTTCTTCTAACATCACTTCACCTACCAAAACCAAACAA
CTTTCCCACAACAATAAGCCAGATGTACCACATTCTAGGCATACAAGATG
ATGAAGTGTGCAAGTTCTTCTATTGCAAGAATTGTTTTACACCTTTGACT
GGACCTGAAGACAAGTGTGCCCACTGTGAAACCCAATACGTATAACGACC
ATTTTGTTGAGAGTCAATTAAAATGAATCTTAAGAAGTAATTGTTACAAA
TTTCTGATTCAAAAACTCTTTATGCTGCTCTGTGTAATTCTGGAATTAAT
AATTTTC
Run BLAST on NCBI

transcript from alignment at sc0002038:24053..28243-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039195 ID=TCONS_00039195|Name=TCONS_00039195|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at sc0002038:24053..28243- (Clytia hemisphaerica)
AACTTACATCAGGTGGGATACCAATTTCTTTATCTTTGTTATCCAATTCG
ATAAGAGGTTTGCACTTAAATTTCCCAGCATCTTTTGTGCTGACAATGCC
ATCTTCAAACCTGACTTTCAATTTAATACCAGTATCTGAAAGTAAAAATG
GTTCATCATTCACTTATTACATATCGTATGGTTTGAGAGAACGCCAATCT
GGAAAGAAGGGAAATGTTACGCTCTGGAGATGCGCGAACTTAACTGGAAA
AAGTTGAAGGCAGCAGATCTCAAATCTCAAATCTACACCGGAGATATCCG
GCGCACAAGCTGCAATTTCCAGACTGGGGAGAACGTGGGGTCTTTTCTAT
CAAAAATTTGGCACACGTGTGGTGGACGACATGCCAACGCTCTGCAAGGG
TCGTTTTATTTCCGTAATAAGGAGCAGACGATTTCCAGCCCAGTTCAAGC
AACAAATTTCAGAAAATCCAGGATTCTTCCTCATTATTTAGTCATATACG
TATCGGAAAATCCAAAAAAATTGCTCTATTTTCTTGCTATAACTTGAACC
GCCCAATTTCCCATGCAAATATTTTCACCATCAAGCATATTTTGTCCAGC
TTTTGGATTAAAAAAAAACATAGAAATTTTTTACAAGTTTTACCTTCATC
GACATCAAGTTTACGCTTGACACTGACACGTTTGCCACTCATTTTCAGTT
GTATAGTAAAAGACAGTGTATAATATAATAAAAGAAAAGCAAGTACTGCA
GTTAGTGTAGCTAGACAGAGTCAGAACGAACGACCAGAGCTTGACCGAAG
CGAATGCAGAAGAATGAGTATGAGCTTCAAATTCCCGCCGAAGATTAGAC
GAAAAATACGGTGTGCGATAGATTACTACTTTGGGCATCGCAGGTAAAAG
ACAAAAGTCGGTCGACGGTAAATTTTGTGTTCCCGCCGAAATTTATTTGA
GAAAAAATGGTAGCCACAGTAATGGTCAAAGCTTCTAACATCTAAATAGT
TTGGAATTCCAAATAGTTTAGTCACTTTGTTTTGGGATAAAGCATATATG
GATAGAGAGTTTGTTTTTGATAGCTTTCTCAACGCAAAATATGACATCCC
AAATTCGTCACCGAGTCAGATGGTTCCTCTGGAAGTGGTTAATGATCAGC
CAGTAGATGACAATGATTTGGATATTATAATGAATGATGAAGTTCATCAT
GATGATGATGATATTGTAGTTCAAAACAATCCACCACTATTACAAGAAAG
AGAACAATTAACTCTAAACTATAATAGAGATCAAGAAATTGCAACACAAT
GGTTATACAACAATGAAGTTAACATTCCGTCAATTGATATTGAAGACTTT
CACAACAGTGGTAAGACAACACACCTTTACTGTATATAAATGCCAACATG
GGTACCTTGTCTAATTCGGGTATACAACTGTCTGGTCTTTTGAACGTTAT
AGATATAACCCTCTCAGTACTTTTTTGCTCTAAAAACCGCCTCCTCCTAA
TAACTAATTCTCAGTCTCAGAGCAGATGAGTTAATTGGGCTTGAATTCCA
AAAAAATAGTAGTAGGGATATTGCCAGACGATGTCAATGGAACAACTTCG
AACAAAAATTGCAATCGAATTAATCGAACCTAATCGAACGCGATCGAATA
CTGTAATTGCGATTCGATTGTCGAACGTATCGAAGCAATCGAACGGCAAA
TCCTGGGTAATATTCGATTGTGATCCGATTGCGTTCGACAATCAAATTGC
AATTATTCGATTGCATTCATTTGCGTTCAATAGACCTTTTTTCAAAGAGG
CCACCCTGTTGAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACC
ATGCATAATTATTACAATATGCATGATACAGTAATTATGCATGGCTCTAT
GATTGTTTTTATAGCTGGACTACATAATTGTTCAACAGGACGTCCTCTTT
GAGAAAAGGTCTATTGATTCGGCGTTCGATTCGTTCGATTGACACCGTCT
GGATATTGACAAACTTTTTTCACTAACCCCCCTGGAAATTTTGGATAACA
AAAATTATCCCCTGGAAATTAGGAGTCGACCCCCTGGAAAATGAAATTTT
GTGAAAAAGGGCCTGGAAAGTGACTATTGATGCCAGTTTAGGAGGAGAGA
ACCCCCTGGAAACCTTCAATAACCCCTTGGAAAATCTGAAAATGACCAAA
AGCCCCCTGGAAAATCAAGGCTCAGATCCCTCTGGAAAGGTTTGTCAATA
TCCATGTATGGTTTAAAAATGGAATGGCCCATTGCTACCGTGAGATTGGG
TAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTAAAATGAATGACCT
GGCTTGGTCATTGAAATACAAAGTTAAATCAAAACAAAAATGATAGAGTG
TAGAGCTGTGAGCGGAGCTGAATATAGTTTATTTCAATAACCAGCAAGGT
CATTCATTTGAGGGCTACTGTATGCATGTTAGCCTCCAGCCACTGATGCA
AGCTACCCACTCTCACGGGATGTGATGCAAGATTAAGTTAAGTTAGCTAT
GATGGCCGCTATATATATAATTAAACAAGGTATGTCGGCATTATAATACA
GTGTAGGGCTGCAATCACAAATAACTTGTGTTTGCGTCGTTTTATAGATA
AAAAAAGAGTTGATCGGTCACAGAGTAAAAGGTCAAACTATGATGATGAG
TACAACCCTGCGCCAACAACGCACCGGACAGTCCGATGTTTTGTCCCGTG
CCAAAAAGTATAATTCAGCCACACCAGAAACCTTTAGTTCTGTATTAGTC
CGGTGTTAATTTTTCAAACTTCTGGACACCGGACACATGTGTTTCAAAAA
TAATGCGCACTGGACTTCGGTGTTGAGATTTGTCTGGTTGTAAAAGAAAG
TATTCTCATCTGACACCTGGACTTTCTTGTCCAGTGTTCATGAAGTCCGG
TGTGTCAGCAGGGTTGTTGATGAGTTGGGCAGAAATCATATCTATCGAGA
ATAGATCTTTTGCCTTTCCATCTGCCATCTTGAATTGTATGCAAAAATAC
AGGAACAAAAAAGCTGTGGTTGGGTTTAGTTGGAAAATTTGCAAAACATA
TGCAAAGTTTACACAAAGATTAAAAAGACAACAAAGCATCTATATTCTAT
ATTATAATCATTAGAACAATAAAAGATTGGCTATATTAATACTTTCTTTT
TGGATAGGTTTTACATATTTTCAATGCACCACTGGAATTTGGCCACCTTA
ATTTTTTCATACAATTCAATATGGCCTGAATATGGCGGATGGAAGAGTGA
ACAGGTCTATTGAAAGTAAACACCCTGCAGTTTTGCTGTCTTTATGACAG
TTCTCAACCGCGGTCGTAGGATTTCACAATAAGACCTTTTTTTTACAAGT
ATATATAAACCGTAATATTTCTGTCTTCATGACTAGGGAAATAGTAAAAG
ATTCCAGCAAACCTATAGGAAAGGGATGGGGATATTATTTCTTATTTTAA
AATAGAATTAAATTCTTCTGTAAAAAAATGTAATATGCGATCAATAATTG
AAATAAAGAAGGATGGAATTTAATAAAAATCTGACACGACTTAAGCTCAT
AAGGGGGGCAGAAAAAGTGTTTGCATGCTTGCTTTTGAAATAATTATACA
TACAATATTATTGTATTGATTTGACTCTCATCTGGATATATTTTAGCTGA
AGCGCACAACATGATGAACATCAATGCTGATGATTGTGGCTACGATGATG
ACAGTTCTATATTTGATACCACACGCCCATATGTTGAACCTAAACCATTA
TGTAATGGAGTCAATTTATCTCTTGAGAACTCAATGCTTCTTCACATGGT
GTTTGCAAGAAGACACAATTTGACAAAGGCAGCACTGAGAGATCTCCTTC
TTCTAACATCACTTCACCTACCAAAACCAAACAACTTTCCCACAACAATA
AGCCAGATGTACCACATTCTAGGCATACAAGATGATGAAGTGTGCAAGTT
CTTCTATTGCAAGAATTGTTTTACACCTTTGACTGGACCTGAAGACAAGT
GTGCCCACTGTGAAACCCAATACGTATAACGACCATTTTGTTGAGAGTCA
ATTAAAATGAATCTTAAGAAGTAATTGTTACAAATTTCTGATTCAAAAAC
TCTTTATGCTGCTCTGTGTAATTCTGGAATTAATAATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023613XLOC_023613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039195-exon-sc0002038-1575043694:28232..28243TCONS_00039195-exon-sc0002038-1575043694:28232..28243Clytia hemisphaericaexon
TCONS_00039195-exon-sc0002038-1575043694:24053..24547TCONS_00039195-exon-sc0002038-1575043694:24053..24547Clytia hemisphaericaexon
TCONS_00039195-exon-sc0002038-1510915933:28232..28243TCONS_00039195-exon-sc0002038-1510915933:28232..28243Clytia hemisphaericaexon
TCONS_00039195-exon-sc0002038-1510915933:24053..24547TCONS_00039195-exon-sc0002038-1510915933:24053..24547Clytia hemisphaericaexon
TCONS_00039195-exon-sc0002038-1491911889:28232..28243TCONS_00039195-exon-sc0002038-1491911889:28232..28243Clytia hemisphaericaexon
TCONS_00039195-exon-sc0002038-1491911889:24053..24547TCONS_00039195-exon-sc0002038-1491911889:24053..24547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:24053..28243 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.126868	0	0	0.200647	0.199917	0.374731	0.730776	0.434796	0.986729	3.05569	1.70902	2.05557	0.692712	0.646295	0.466943	0.805749	0.354859	0.682518	0.248203	0.55385	0.456311	0.233031	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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