TCONS_00039194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039194
Unique NameTCONS_00039194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039194 ID=TCONS_00039194|Name=TCONS_00039194|organism=Clytia hemisphaerica|type=transcript|length=610bp
AGTTCAAAACAATCCACCACTATTACAAGAAAGAGAACAATTAACTCTAA
ACTATAATAGAGATCAAGAAATTGCAACACAATGGTTATACAACAATGAA
GTTAACATTCCGTCAATTGATATTGAAGACTTTCACAACAGTGCTGAAGC
GCACAACATGATGAACATCAATGCTGATGATTGTGGCTACGATGATGACA
GTTCTATATTTGATACCACACGCCCATATGTTGAACCTAAACCATTATGT
AATGGAGTCAATTTATCTCTTGAGAACTCAATGCTTCTTCACATGGTGTT
TGCAAGAAGACACAATTTGACAAAGGCAGCACTGAGAGATCTCCTTCTTC
TAACATCACTTCACCTACCAAAACCAAACAACTTTCCCACAACAATAAGC
CAGATGTACCACATTCTAGGCATACAAGATGATGAAGTGTGCAAGTTCTT
CTATTGCAAGAATTGTTTTACACCTTTGACTGGACCTGAAGACAAGTGTG
CCCACTGTGAAACCCAATACGTATAACGACCATTTTGTTGAGAGTCAATT
AAAATGAATCTTAAGAAAACCAGGTGTCCGCGAATCACTTCACAAACCTA
TTCCCAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00039194-protein

>TCONS_00039194-protein ID=TCONS_00039194-protein|Name=TCONS_00039194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
VQNNPPLLQEREQLTLNYNRDQEIATQWLYNNEVNIPSIDIEDFHNSAEA
HNMMNINADDCGYDDDSSIFDTTRPYVEPKPLCNGVNLSLENSMLLHMVF
ARRHNLTKAALRDLLLLTSLHLPKPNNFPTTISQMYHILGIQDDEVCKFF
YCKNCFTPLTGPEDKCAHCETQYV
Run BLAST on NCBI

transcript from alignment at sc0002038:23110..27026-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039194 ID=TCONS_00039194|Name=TCONS_00039194|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at sc0002038:23110..27026- (Clytia hemisphaerica)
AGTTCAAAACAATCCACCACTATTACAAGAAAGAGAACAATTAACTCTAA
ACTATAATAGAGATCAAGAAATTGCAACACAATGGTTATACAACAATGAA
GTTAACATTCCGTCAATTGATATTGAAGACTTTCACAACAGTGGTAAGAC
AACACACCTTTACTGTATATAAATGCCAACATGGGTACCTTGTCTAATTC
GGGTATACAACTGTCTGGTCTTTTGAACGTTATAGATATAACCCTCTCAG
TACTTTTTTGCTCTAAAAACCGCCTCCTCCTAATAACTAATTCTCAGTCT
CAGAGCAGATGAGTTAATTGGGCTTGAATTCCAAAAAAATAGTAGTAGGG
ATATTGCCAGACGATGTCAATGGAACAACTTCGAACAAAAATTGCAATCG
AATTAATCGAACCTAATCGAACGCGATCGAATACTGTAATTGCGATTCGA
TTGTCGAACGTATCGAAGCAATCGAACGGCAAATCCTGGGTAATATTCGA
TTGTGATCCGATTGCGTTCGACAATCAAATTGCAATTATTCGATTGCATT
CATTTGCGTTCAATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAAT
TATGTAGTCCAGCAGAAAAACAATGATAAAACCATGCATAATTATTACAA
TATGCATGATACAGTAATTATGCATGGCTCTATGATTGTTTTTATAGCTG
GACTACATAATTGTTCAACAGGACGTCCTCTTTGAGAAAAGGTCTATTGA
TTCGGCGTTCGATTCGTTCGATTGACACCGTCTGGATATTGACAAACTTT
TTTCACTAACCCCCCTGGAAATTTTGGATAACAAAAATTATCCCCTGGAA
ATTAGGAGTCGACCCCCTGGAAAATGAAATTTTGTGAAAAAGGGCCTGGA
AAGTGACTATTGATGCCAGTTTAGGAGGAGAGAACCCCCTGGAAACCTTC
AATAACCCCTTGGAAAATCTGAAAATGACCAAAAGCCCCCTGGAAAATCA
AGGCTCAGATCCCTCTGGAAAGGTTTGTCAATATCCATGTATGGTTTAAA
AATGGAATGGCCCATTGCTACCGTGAGATTGGGTAACTTGCATCAGTGGA
GGCTAACATGCATAGCCCTAAAATGAATGACCTGGCTTGGTCATTGAAAT
ACAAAGTTAAATCAAAACAAAAATGATAGAGTGTAGAGCTGTGAGCGGAG
CTGAATATAGTTTATTTCAATAACCAGCAAGGTCATTCATTTGAGGGCTA
CTGTATGCATGTTAGCCTCCAGCCACTGATGCAAGCTACCCACTCTCACG
GGATGTGATGCAAGATTAAGTTAAGTTAGCTATGATGGCCGCTATATATA
TAATTAAACAAGGTATGTCGGCATTATAATACAGTGTAGGGCTGCAATCA
CAAATAACTTGTGTTTGCGTCGTTTTATAGATAAAAAAAGAGTTGATCGG
TCACAGAGTAAAAGGTCAAACTATGATGATGAGTACAACCCTGCGCCAAC
AACGCACCGGACAGTCCGATGTTTTGTCCCGTGCCAAAAAGTATAATTCA
GCCACACCAGAAACCTTTAGTTCTGTATTAGTCCGGTGTTAATTTTTCAA
ACTTCTGGACACCGGACACATGTGTTTCAAAAATAATGCGCACTGGACTT
CGGTGTTGAGATTTGTCTGGTTGTAAAAGAAAGTATTCTCATCTGACACC
TGGACTTTCTTGTCCAGTGTTCATGAAGTCCGGTGTGTCAGCAGGGTTGT
TGATGAGTTGGGCAGAAATCATATCTATCGAGAATAGATCTTTTGCCTTT
CCATCTGCCATCTTGAATTGTATGCAAAAATACAGGAACAAAAAAGCTGT
GGTTGGGTTTAGTTGGAAAATTTGCAAAACATATGCAAAGTTTACACAAA
GATTAAAAAGACAACAAAGCATCTATATTCTATATTATAATCATTAGAAC
AATAAAAGATTGGCTATATTAATACTTTCTTTTTGGATAGGTTTTACATA
TTTTCAATGCACCACTGGAATTTGGCCACCTTAATTTTTTCATACAATTC
AATATGGCCTGAATATGGCGGATGGAAGAGTGAACAGGTCTATTGAAAGT
AAACACCCTGCAGTTTTGCTGTCTTTATGACAGTTCTCAACCGCGGTCGT
AGGATTTCACAATAAGACCTTTTTTTTACAAGTATATATAAACCGTAATA
TTTCTGTCTTCATGACTAGGGAAATAGTAAAAGATTCCAGCAAACCTATA
GGAAAGGGATGGGGATATTATTTCTTATTTTAAAATAGAATTAAATTCTT
CTGTAAAAAAATGTAATATGCGATCAATAATTGAAATAAAGAAGGATGGA
ATTTAATAAAAATCTGACACGACTTAAGCTCATAAGGGGGGCAGAAAAAG
TGTTTGCATGCTTGCTTTTGAAATAATTATACATACAATATTATTGTATT
GATTTGACTCTCATCTGGATATATTTTAGCTGAAGCGCACAACATGATGA
ACATCAATGCTGATGATTGTGGCTACGATGATGACAGTTCTATATTTGAT
ACCACACGCCCATATGTTGAACCTAAACCATTATGTAATGGAGTCAATTT
ATCTCTTGAGAACTCAATGCTTCTTCACATGGTGTTTGCAAGAAGACACA
ATTTGACAAAGGCAGCACTGAGAGATCTCCTTCTTCTAACATCACTTCAC
CTACCAAAACCAAACAACTTTCCCACAACAATAAGCCAGATGTACCACAT
TCTAGGCATACAAGATGATGAAGTGTGCAAGTTCTTCTATTGCAAGAATT
GTTTTACACCTTTGACTGGACCTGAAGACAAGTGTGCCCACTGTGAAACC
CAATACGTATAACGACCATTTTGTTGAGAGTCAATTAAAATGAATCTTAA
GAAGTAATTGTTACAAATTTCTGATTCAAAAACTCTTTATGCTGCTCTGT
GTAATTCTGGAATTAATAATTTTCTATAATAAACAAAGAGTTCATACTTT
ACTGGAAGATATTTATATAATCTTTGTCTAAAATTTGCATCTTGTGAAGA
ATTTACAAAAATATATTTTACATTTAGAAAAGAACAAAAAAAAATTTTTG
AATTGAATTTTGTGTTTTGATGTTGTTTTTTATTTCCTCTTTAGAACCAG
GTCTCCGCAAATCACTTCACAAACCAATTCCCAAAACAGAACCAGTATAC
AGGGATATATGATGGCCAATTCTACCAAAACCTCATAAGTCATGGATACT
TCAACAAAGAATTGAGTTTGACCTGCCAAATGAACACAGATGGTGTGAAC
CTGTTTAACAGTAGCTCATTTTCTGTATGGCCTGTGTATCTCTCCATAAA
TGAACTTCCACCAAAAATGAGATATATTAGTATTACCAAAGATTTAGAAA
TTAAACTTGATCATTTGCATAATCAATCTAAAAACACTTCCAAACTTCTG
ACATATCTTTTTTTAGGAAATCTAAAAAGTACCGAATATTTGCTGGGCTC
TGGTTTGGTTACAACAAGCCTTACATGAGGACATTTTTGCGGCCATTAAT
TGAGGAAATGAAGAAACTTACATTTGAAGGTTCATTTTTTAAATAAACTT
TGGATGAATTCTCNTAATTGTTACAAATTTCTGATTCAAAAACTCTTTAT
GCTGCTCTGTGTAATTCTGGAATTAGTAATTTTCTATAATAAACAAAGAG
TTTATACTTTACTGGAAGACATTTTTAGCTCTTTTTTATTTATATAATCT
TTGTCTAAAATTTGCATCTTGTGAAGAACTTTCAAAGATATATTTTACAT
TTAGAAAAGAAAAAAAATTTATTTTTTTAAATTGAATTTTGTGTTTTGAT
GTTGTTTTTTTATTTCCTCCTTAGAACCAGGTGTCCGCGAATCACTTCAC
AAACCTATTCCCAAAAC

Coding sequence (CDS) from alignment at sc0002038:23110..27026-

>TCONS_00039194 ID=TCONS_00039194|Name=TCONS_00039194|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0002038:23110..27026- (Clytia hemisphaerica)
CTGAAGCGCACAACATGATGAACATCAATGCTGATGATTGTGGCTACGAT
GATGACAGTTCTATATTTGATACCACACGCCCATATGTTGAACCTAAACC
ATTATGTAATGGAGTCAATTTATCTCTTGAGAACTCAATGCTTCTTCACA
TGGTGTTTGCAAGAAGACACAATTTGACAAAGGCAGCACTGAGAGATCTC
CTTCTTCTAACATCACTTCACCTACCAAAACCAAACAACTTTCCCACAAC
AATAAGCCAGATGTACCACATTCTAGGCATACAAGATGATGAAGTGTGCA
AGTTCTTCTATTGCAAGAATTGTTTTACACCTTTGACTGGACCTGAAGAC
AAGTGTGCCCACTGTGAAACCCAATACGTATAAGTTCAAAACAATCCACC
ACTATTACAAGAAAGAGAACAATTAACTCTAAACTATAATAGAGATCAAG
AAATTGCAACACAATGGTTATACAACAATGAAGTTAACATTCCGTCAATT
GATATTGAAGACTTTCACAACAGTGCTGAAGCGCACAACATGATGAACAT
CAATGCTGATGATTGTGGCTACGATGATGACAGTTCTATATTTGATACCA
CACGCCCATATGTTGAACCTAAACCATTATGTAATGGAGTCAATTTATCT
CTTGAGAACTCAATGCTTCTTCACATGGTGTTTGCAAGAAGACACAATTT
GACAAAGGCAGCACTGAGAGATCTCCTTCTTCTAACATCACTTCACCTAC
CAAAACCAAACAACTTTCCCACAACAATAAGCCAGATGTACCACATTCTA
GGCATACAAGATGATGAAGTGTGCAAGTTCTTCTATTGCAAGAATTGTTT
TACACCTTTGACTGGACCTGAAGACAAGTGTGCCCACTGTGAAACCCAAT
ACGTATAAGTTCAAAACAATCCACCACTATTACAAGAAAGAGAACAATTA
ACTCTAAACTATAATAGAGATCAAGAAATTGCAACACAATGGTTATACAA
CAATGAAGTTAACATTCCGTCAATTGATATTGAAGACTTTCACAACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023613XLOC_023613Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039194-proteinTCONS_00039194-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039194-exon-sc0002038-1575043694:26884..27026TCONS_00039194-exon-sc0002038-1575043694:26884..27026Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1575043694:24124..24547TCONS_00039194-exon-sc0002038-1575043694:24124..24547Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1575043694:23110..23152TCONS_00039194-exon-sc0002038-1575043694:23110..23152Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1510915933:26884..27026TCONS_00039194-exon-sc0002038-1510915933:26884..27026Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1510915933:24124..24547TCONS_00039194-exon-sc0002038-1510915933:24124..24547Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1510915933:23110..23152TCONS_00039194-exon-sc0002038-1510915933:23110..23152Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1491911889:26884..27026TCONS_00039194-exon-sc0002038-1491911889:26884..27026Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1491911889:24124..24547TCONS_00039194-exon-sc0002038-1491911889:24124..24547Clytia hemisphaericaexon
TCONS_00039194-exon-sc0002038-1491911889:23110..23152TCONS_00039194-exon-sc0002038-1491911889:23110..23152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:23110..27026 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.341239	0.425951	0	0.128477	0.348968	0.281847	0.0887698	0	1.54728	0.562998	0	0.370188	0.366152	0.145072	0	0.487318	0	0	0.158349	0	0.312082	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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