TCONS_00039193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039193
Unique NameTCONS_00039193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039193 ID=TCONS_00039193|Name=TCONS_00039193|organism=Clytia hemisphaerica|type=transcript|length=778bp
ATCTTTTTTTAGGAAATCTAAAAAGTACCGAATATTTGCTGGGCTCTGGT
TTGGTTACAACAAGCCTTACATGAGGACATTTTTGCGGCCATTAATTGAG
GAAATGAAGAAACTTACATTTGAagaattttcaatcATTGAAGAAGAAAG
TGGTAAAGAGGTGGAgggaaaaataacaataattagTGGACTGTTTGATC
TACCAGCCAAATGTTTGGTTCAAGAAATGGTTCAATTTAATGGTTACTAC
GGATGCAGCTGCTGTGAGATTGAGTAAGAAACTGTGGCTTCAAATGTAGT
TTTTCCATTTGTTGAAAATCAACAACAAAGAACTCAACTGAGAACACTCG
GACAAGCTATGGTTGCTttagaaacaaaagaaacaGTTTTCGGTACACGT
GGATACTCAATCCTTGGTCAACTGCCTTTTATTGATGTAATTTGGAATAT
ACCGTTTGACTACATGCATGGAATATTTCAAGGTGTAGCAAAGTCGCTCG
ATAGGTTATGGTTTGACTCTGTGTATTCAAAGAAGCCATGGTATCTTGGC
AAAGACGTTCTTATAATTGATAAGGCATTGCTTTCTTTGAAACCAACTGA
TGAAGTTACCAGACTTCCACGAAGTTTAGCTGCACATCGcaattatttta
aagCAAATAAATGCCGAAATTGGATGTTCTACTATGCCCCTGTGATTCTA
AATGGAATTCTGCCAGACCCTTACTTCAGtcattttctacttATTGTAAA
TGGAATATTTATacttcaaaaagaagaa
Run BLAST on NCBI

transcript from alignment at sc0002038:19629..23572-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039193 ID=TCONS_00039193|Name=TCONS_00039193|organism=Clytia hemisphaerica|type=transcript|length=3944bp|location=Sequence derived from alignment at sc0002038:19629..23572- (Clytia hemisphaerica)
ATCTTTTTTTAGGAAATCTAAAAAGTACCGAATATTTGCTGGGCTCTGGT
TTGGTTACAACAAGCCTTACATGAGGACATTTTTGCGGCCATTAATTGAG
GAAATGAAGAAACTTACATTTGAAGGTTCATTTTTTAAATAAACTTTGGA
TGAATTCTCNTAATTGTTACAAATTTCTGATTCAAAAACTCTTTATGCTG
CTCTGTGTAATTCTGGAATTAGTAATTTTCTATAATAAACAAAGAGTTTA
TACTTTACTGGAAGACATTTTTAGCTCTTTTTTATTTATATAATCTTTGT
CTAAAATTTGCATCTTGTGAAGAACTTTCAAAGATATATTTTACATTTAG
AAAAGAAAAAAAATTTATTTTTTTAAATTGAATTTTGTGTTTTGATGTTG
TTTTTTTATTTCCTCCTTAGAACCAGGTGTCCGCGAATCACTTCACAAAC
CTATTCCCAAAACAGAACCAGTATACAGGGAGATATATGATGGCCAATTC
TACCAAAACCTCATAAGTCATGGATACTTCAACAAAGAATTGAGTTTGAC
CTGCCAAATGAACACAGATGGTGTGAACCTGTTTAACAGTAGCTCATTTT
CTGTATGGCCTGTGTATCTCTCCATAAATGAACTTCCACCAAAAATGAGG
TATATTAGTATTACCAAAGATTTAGAAATTAAATTAATTTGATCATTTGC
ATAATCATGGTCTACATCAAGAGTTAATTATCTAAAAACACTTCCAAACT
TCTGACATATCTTTTTTTAGGAAATCTAAAAAGTACCGAATATTTGCTGG
GCTCTGGTTTGGTTACAACAAGCCTTACATGAGGACATTTTTGCGGCCAT
TAATTGAGGAAATGAAGAAACTTACATTTGAAGGTTCATTTTTTAAATAA
ACTTTGGATGAATTCTCTGAGTTGGAACAGGTTTTGTTTTCTATGGGGAA
ACAATAATGCATGCATGCATCTATTAAACACTATTAGAGTTTCTTATAGT
TGACAAGATGGTAGTCTTTATTCAAAACTCTGTATACTCATTATCATTTG
TAACTTTTTAACCCCATAAAAAAGCTGCCTATTTTGTCTATTTTGATATA
GCTATGAATTTGTAGACGGTTCATGTCGTCGGTTTAGCTTAGCCCCTAGG
ATGATAAAGATGGTATTGCTGATGCTGTCTTGATTTCAAAACAATCTTAC
GGGACAACATCTTAATAATCCACTTCTTGTGCGGAAGATCTCAGTTTTTA
CCTGCGCATTGACTATTTAAATAATACTTACTTGCCAGATAAAATCTTTG
CTCCTTTCTCATTCATGTTATACTTATTTTTTTTCAATTTAAAGAATTTT
CAATCATTGAAGAAGAAAGTGGTAAAGAGGTGGAGGGAAAAATAACAATA
ATTAGTGGACTGTTTGATCTACCAGGTAAATTTGTATAGAATATTGAATA
TGAATTCCAAAGTTTTTTTTGTGTGTTTCCAAAAGAAAAAAATCCTCGCT
TCTCATTTTAGAAAGATTGGCACTCTGCTTTCCAACGATTTAGTAAGATG
ATATTTGCTAAATCTTATTACATAGCATCAGCTGCCCCTGTTAGTTGAGG
CTGGGTTCCACCCTCCAAAGAGCCCAAATAAGTGGGAGCTAAAGATTTTT
CAAATATTTGGGGGGGCTATCTAATGTACATGATGGGGAGCTGAAATTGC
ATTATTTAACATGGGAGCTGAATATTTCATCTTAATGGTTGGCTTTAACC
TTCATAATTTACATCGAATAAACCTTTTTTTGTGGAACGAACTTTTAAAA
GTCTCGAGGGTCAAAATGAATCGTGAATCTTTAGGGGGACTCAAAACTCA
TGGGGAACCTAATTTTTTCACTGGGACCTAACCCCAGTTAGGTCTACTCC
CAAAATCTTATACTTAAGAAATTGTAACAAATTAATCAAATTAATCTAGA
ATTTCTTATTTTATATTAGCCAAATGTTTGGTTCAAGAAATGGTTCAATT
TAATGGTTACTACGGATGCAGCTGCTGTGAGATTGAGTAAGAAACTGTGG
CTTCAAATGTAGTTTTTCCATTTGTTGAAAATCAACAACAAAGAACTCAA
CTGAGAACACTCGGACAAGCTATGGTTGCTTTAGAAACAAAAGAAACAGT
TAGTTGAAATAATAATTTGATATTTTCCTGAATTCTGCTGTATGTAGGGC
TAAAATAGGTACATAAGGAAATCTTCTTTTGCTTCTGTTTATCATTCTTT
TTCATTGTACTGAGAATAAATATCGATTACTTAAGTTATACTGACATTTA
CATACGTAAGTTAGATGTTCATTAGCACACAGCCAATGTAGTTTTTTCTT
CTTTTGATTCCTTTTAAGGTTTTCGGTACACGTGGATACTCAATCCTTGG
TCAACTGCCTTTTATTGATGTAATTTGGAATATACCGTTTGACTACATGC
ATGGAATATTTCAAGGTGTAGCAAAGTAAGCGAATTAAGTTTTCATCGAA
ATTAATGATACCATTCTTTTGTTCTCCTCTAATTATCATCTTAATATGTC
TCTATTTACATTTAGGTCGCTCGATAGGTTATGGTTTGACTCTGTGTATT
CAAAGAAGCCATGGTATCTTGGCAAAGACGTTCTTATAATTGATAAGGCA
TTGCTTTCTTTGAAACCAACTGATGAAGTTACCAGACTTCCACGAAGTTT
AGCTGCACATCGCAATTATTTTAAAGGTATTCAAACCGTTAACACATAAG
GCCATATCACACTTCTATGGTATTCATAGTGTGGAAAAATGAGGTTCCAC
CACTACTTAAAACTCCCACCTGAAATCAATGACCCTCTAAGTCCCAGCAT
TTCAGGTAGAGAAATCCAAAATCTGAAAAAGAATGGTGCACAAGGTTCCA
CGAAATTCAGAAGCAAAGAAACCTCAGGCTTTGCAGGGCAAGGACACCAG
GCCTTGAAAATGAGAATAGTTCAGCCTGCATACCCACGGTAAATAATGAT
AGATTCTTAAAATACTAAAACACCCGAAGTCTTCTTCCCTTAGCATAATG
ATATTACCATAATGATATTCTGAAACAATCTAAACGAACTGCTTTTCATG
AATCCATCATAAGACGTTTCAAGGTTTTTCTCGCATTTGGAATATCAAAA
ATTTATAACTTGACCGGCTGCTGGGACCAGAAGGCTTTTAGACGAAAAAT
TCTAAAGTTTCTCAATTNTAAGACGTTTCAAGGTTTTTCTCGCATTTGGA
ATATCAAAAATTTATAACTTGACCGGCTGCTGGGACCAGAAGGCTTTTAG
ACCAAAAATTCTAAAGTTTCTCAATTCTAAATTTTCTTAATTTATTCTAA
TAATTCTATAATTATTCACTTATCCATTGGATAGCAAATAAATGCCGAAA
TTGGATGTTCTACTATGCCCCTGTGATTCTAAATGGAATTCTGCCAGACC
CTTACTTCAGGTAGGAATAGTTAACTTAAGTTGAACTAGAATCTAAATTG
TATTATATTGTATTATATGTATGAATTTATGTATGTAGGGTGAACATTAA
AAACACAGTTGTGTATGCGACGTTTCAATAATTTTGTACACAATAATTTG
GCTGAAATTATATCGATCGTAGGGAATAACAGATAATTACAAAGAAGTTA
AGCTAGACATAAAATATTTCATTTGGGATTAAAAGGGAAGAAAATTGCAA
GCTAAATTATTTCACGAGCTTCCTTGACTCAATTTCGGAATCTTCTAATT
AGTTTATTCAACACAACCCATTAGCACGTGAGACAGTGATCTTTCAATGG
GAAGGTTTGCAATCATCTTGNATTTCAGAATCTTCTAAGACAGTGATCTT
GCAATGGGAAGGTCTGCAATCATCTTGTTCAAATTTTCTTTTCAGTCATT
TTCTACTTATTGTAAATGGAATATTTATACTTCAAAAAGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023612XLOC_023612Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039193-exon-sc0002038-1575043694:23448..23572TCONS_00039193-exon-sc0002038-1575043694:23448..23572Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1575043694:22148..22228TCONS_00039193-exon-sc0002038-1575043694:22148..22228Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1575043694:21425..21603TCONS_00039193-exon-sc0002038-1575043694:21425..21603Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1575043694:21098..21204TCONS_00039193-exon-sc0002038-1575043694:21098..21204Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1575043694:20847..21007TCONS_00039193-exon-sc0002038-1575043694:20847..21007Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1575043694:20113..20188TCONS_00039193-exon-sc0002038-1575043694:20113..20188Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1575043694:19629..19677TCONS_00039193-exon-sc0002038-1575043694:19629..19677Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1510915933:23448..23572TCONS_00039193-exon-sc0002038-1510915933:23448..23572Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1510915933:22148..22228TCONS_00039193-exon-sc0002038-1510915933:22148..22228Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1510915933:21425..21603TCONS_00039193-exon-sc0002038-1510915933:21425..21603Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1510915933:21098..21204TCONS_00039193-exon-sc0002038-1510915933:21098..21204Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1510915933:20847..21007TCONS_00039193-exon-sc0002038-1510915933:20847..21007Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1510915933:20113..20188TCONS_00039193-exon-sc0002038-1510915933:20113..20188Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1510915933:19629..19677TCONS_00039193-exon-sc0002038-1510915933:19629..19677Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1491911889:23448..23572TCONS_00039193-exon-sc0002038-1491911889:23448..23572Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1491911889:22148..22228TCONS_00039193-exon-sc0002038-1491911889:22148..22228Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1491911889:21425..21603TCONS_00039193-exon-sc0002038-1491911889:21425..21603Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1491911889:21098..21204TCONS_00039193-exon-sc0002038-1491911889:21098..21204Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1491911889:20847..21007TCONS_00039193-exon-sc0002038-1491911889:20847..21007Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1491911889:20113..20188TCONS_00039193-exon-sc0002038-1491911889:20113..20188Clytia hemisphaericaexon
TCONS_00039193-exon-sc0002038-1491911889:19629..19677TCONS_00039193-exon-sc0002038-1491911889:19629..19677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:19629..23572 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0352985	0	0	0	0	0	0	0.0650818	0.06317	0.0207627	0.103669	0.258388	0.761207	0.22797	0.374454	0.167914	0.265122	0.589541	0.120569	0.088214	0.0357452	0.0974928	0.100415	0.149364	0	0	0	0.105763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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