TCONS_00039192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039192
Unique NameTCONS_00039192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039192 ID=TCONS_00039192|Name=TCONS_00039192|organism=Clytia hemisphaerica|type=transcript|length=778bp
ATCTTTTTTTAGGAAATCTAAAAAGTACCGAATATTTGCTGGGCTCTGGT
TTGGTTACAACAAGCCTTACATGAGGACATTTTTGCGGCCATTAATTGAG
GAAATGAAGAAACTTACATTTGAagaattttcaatcATTGAAGAAGAAAG
TGGTAAAGAGGTGGAgggaaaaataacaataattagTGGACTGTTTGATC
TACCAGCCAAATGTTTGGTTCAAGAAATGGTTCAATTTAATGGTTACTAC
GGATGCAGCTGCTGTGAGATTGAGTAAGAAACTGTGGCTTCAAATGTAGT
TTTTCCATTTGTTGAAAATCAACAACAAAGAACTCAACTGAGAACACTCG
GACAAGCTATGGTTGCTttagaaacaaaagaaacaGTTTTCGGTACACGT
GGATACTCAATCCTTGGTCAACTGCCTTTTATTGATGTAATTTGGAATAT
ACCGTTTGACTACATGCATGGAATATTTCAAGGTGTAGCAAAGTCGCTCG
ATAGGTTATGGTTTGACTCTGTGTATTCAAAGAAGCCATGGTATCTTGGC
AAAGACGTTCTTATAATTGATAAGGCATTGCTTTCTTTGAAACCAACTGA
TGAAGTTACCAGACTTCCACGAAGTTTAGCTGCACATCGcaattatttta
aagCAAATAAATGCCGAAATTGGATGTTCTACTATGCCCCTGTGATTCTA
AATGGAATTCTGCCAGACCCTTACTTCAGtcattttctacttATTGTAAA
TGGAATATTTATacttcaaaaagaagaa
Run BLAST on NCBI

protein sequence of TCONS_00039192-protein

>TCONS_00039192-protein ID=TCONS_00039192-protein|Name=TCONS_00039192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MVALETKETVFGTRGYSILGQLPFIDVIWNIPFDYMHGIFQGVAKSLDRL
WFDSVYSKKPWYLGKDVLIIDKALLSLKPTDEVTRLPRSLAAHRNYFKAN
KCRNWMFYYAPVILNGILPDPYFSHFLLIVNGIFILQKEE
Run BLAST on NCBI

transcript from alignment at sc0002038:19629..22814-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039192 ID=TCONS_00039192|Name=TCONS_00039192|organism=Clytia hemisphaerica|type=transcript|length=3186bp|location=Sequence derived from alignment at sc0002038:19629..22814- (Clytia hemisphaerica)
ATCTTTTTTTAGGAAATCTAAAAAGTACCGAATATTTGCTGGGCTCTGGT
TTGGTTACAACAAGCCTTACATGAGGACATTTTTGCGGCCATTAATTGAG
GAAATGAAGAAACTTACATTTGAAGGTTCATTTTTTAAATAAACTTTGGA
TGAATTCTCTGAGTTGGAACAGGTTTTGTTTTCTATGGGGAAACAATAAT
GCATGCATGCATCTATTAAACACTATTAGAGTTTCTTATAGTTGACAAGA
TGGTAGTCTTTATTCAAAACTCTGTATACTCATTATCATTTGTAACTTTT
TAACCCCATAAAAAAGCTGCCTATTTTGTCTATTTTGATATAGCTATGAA
TTTGTAGACGGTTCATGTCGTCGGTTTAGCTTAGCCCCTAGGATGATAAA
GATGGTATTGCTGATGCTGTCTTGATTTCAAAACAATCTTACGGGACAAC
ATCTTAATAATCCACTTCTTGTGCGGAAGATCTCAGTTTTTACCTGCGCA
TTGACTATTTAAATAATACTTACTTGCCAGATAAAATCTTTGCTCCTTTC
TCATTCATGTTATACTTATTTTTTTTCAATTTAAAGAATTTTCAATCATT
GAAGAAGAAAGTGGTAAAGAGGTGGAGGGAAAAATAACAATAATTAGTGG
ACTGTTTGATCTACCAGGTAAATTTGTATAGAATATTGAATATGAATTCC
AAAGTTTTTTTTGTGTGTTTCCAAAAGAAAAAAATCCTCGCTTCTCATTT
TAGAAAGATTGGCACTCTGCTTTCCAACGATTTAGTAAGATGATATTTGC
TAAATCTTATTACATAGCATCAGCTGCCCCTGTTAGTTGAGGCTGGGTTC
CACCCTCCAAAGAGCCCAAATAAGTGGGAGCTAAAGATTTTTCAAATATT
TGGGGGGGCTATCTAATGTACATGATGGGGAGCTGAAATTGCATTATTTA
ACATGGGAGCTGAATATTTCATCTTAATGGTTGGCTTTAACCTTCATAAT
TTACATCGAATAAACCTTTTTTTGTGGAACGAACTTTTAAAAGTCTCGAG
GGTCAAAATGAATCGTGAATCTTTAGGGGGACTCAAAACTCATGGGGAAC
CTAATTTTTTCACTGGGACCTAACCCCAGTTAGGTCTACTCCCAAAATCT
TATACTTAAGAAATTGTAACAAATTAATCAAATTAATCTAGAATTTCTTA
TTTTATATTAGCCAAATGTTTGGTTCAAGAAATGGTTCAATTTAATGGTT
ACTACGGATGCAGCTGCTGTGAGATTGAGTAAGAAACTGTGGCTTCAAAT
GTAGTTTTTCCATTTGTTGAAAATCAACAACAAAGAACTCAACTGAGAAC
ACTCGGACAAGCTATGGTTGCTTTAGAAACAAAAGAAACAGTTAGTTGAA
ATAATAATTTGATATTTTCCTGAATTCTGCTGTATGTAGGGCTAAAATAG
GTACATAAGGAAATCTTCTTTTGCTTCTGTTTATCATTCTTTTTCATTGT
ACTGAGAATAAATATCGATTACTTAAGTTATACTGACATTTACATACGTA
AGTTAGATGTTCATTAGCACACAGCCAATGTAGTTTTTTCTTCTTTTGAT
TCCTTTTAAGGTTTTCGGTACACGTGGATACTCAATCCTTGGTCAACTGC
CTTTTATTGATGTAATTTGGAATATACCGTTTGACTACATGCATGGAATA
TTTCAAGGTGTAGCAAAGTAAGCGAATTAAGTTTTCATCGAAATTAATGA
TACCATTCTTTTGTTCTCCTCTAATTATCATCTTAATATGTCTCTATTTA
CATTTAGGTCGCTCGATAGGTTATGGTTTGACTCTGTGTATTCAAAGAAG
CCATGGTATCTTGGCAAAGACGTTCTTATAATTGATAAGGCATTGCTTTC
TTTGAAACCAACTGATGAAGTTACCAGACTTCCACGAAGTTTAGCTGCAC
ATCGCAATTATTTTAAAGGTATTCAAACCGTTAACACATAAGGCCATATC
ACACTTCTATGGTATTCATAGTGTGGAAAAATGAGGTTCCACCACTACTT
AAAACTCCCACCTGAAATCAATGACCCTCTAAGTCCCAGCATTTCAGGTA
GAGAAATCCAAAATCTGAAAAAGAATGGTGCACAAGGTTCCACGAAATTC
AGAAGCAAAGAAACCTCAGGCTTTGCAGGGCAAGGACACCAGGCCTTGAA
AATGAGAATAGTTCAGCCTGCATACCCACGGTAAATAATGATAGATTCTT
AAAATACTAAAACACCCGAAGTCTTCTTCCCTTAGCATAATGATATTACC
ATAATGATATTCTGAAACAATCTAAACGAACTGCTTTTCATGAATCCATC
ATAAGACGTTTCAAGGTTTTTCTCGCATTTGGAATATCAAAAATTTATAA
CTTGACCGGCTGCTGGGACCAGAAGGCTTTTAGACGAAAAATTCTAAAGT
TTCTCAATTNTAAGACGTTTCAAGGTTTTTCTCGCATTTGGAATATCAAA
AATTTATAACTTGACCGGCTGCTGGGACCAGAAGGCTTTTAGACCAAAAA
TTCTAAAGTTTCTCAATTCTAAATTTTCTTAATTTATTCTAATAATTCTA
TAATTATTCACTTATCCATTGGATAGCAAATAAATGCCGAAATTGGATGT
TCTACTATGCCCCTGTGATTCTAAATGGAATTCTGCCAGACCCTTACTTC
AGGTAGGAATAGTTAACTTAAGTTGAACTAGAATCTAAATTGTATTATAT
TGTATTATATGTATGAATTTATGTATGTAGGGTGAACATTAAAAACACAG
TTGTGTATGCGACGTTTCAATAATTTTGTACACAATAATTTGGCTGAAAT
TATATCGATCGTAGGGAATAACAGATAATTACAAAGAAGTTAAGCTAGAC
ATAAAATATTTCATTTGGGATTAAAAGGGAAGAAAATTGCAAGCTAAATT
ATTTCACGAGCTTCCTTGACTCAATTTCGGAATCTTCTAATTAGTTTATT
CAACACAACCCATTAGCACGTGAGACAGTGATCTTTCAATGGGAAGGTTT
GCAATCATCTTGNATTTCAGAATCTTCTAAGACAGTGATCTTGCAATGGG
AAGGTCTGCAATCATCTTGTTCAAATTTTCTTTTCAGTCATTTTCTACTT
ATTGTAAATGGAATATTTATACTTCAAAAAGAAGAA

Coding sequence (CDS) from alignment at sc0002038:19629..22814-

>TCONS_00039192 ID=TCONS_00039192|Name=TCONS_00039192|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0002038:19629..22814- (Clytia hemisphaerica)
TCATTTTCTACTTATTGTAAATGGAATATTTATACTTCAAAAAGAAGAAC
AAATAAATGCCGAAATTGGATGTTCTACTATGCCCCTGTGATTCTAAATG
GAATTCTGCCAGACCCTTACTTCAGGTCGCTCGATAGGTTATGGTTTGAC
TCTGTGTATTCAAAGAAGCCATGGTATCTTGGCAAAGACGTTCTTATAAT
TGATAAGGCATTGCTTTCTTTGAAACCAACTGATGAAGTTACCAGACTTC
CACGAAGTTTAGCTGCACATCGCAATTATTTTAAAGGTTTTCGGTACACG
TGGATACTCAATCCTTGGTCAACTGCCTTTTATTGATGTAATTTGGAATA
TACCGTTTGACTACATGCATGGAATATTTCAAGGTGTAGCAAAATGGTTG
CTTTAGAAACAAAAGAAACATCATTTTCTACTTATTGTAAATGGAATATT
TATACTTCAAAAAGAAGAACAAATAAATGCCGAAATTGGATGTTCTACTA
TGCCCCTGTGATTCTAAATGGAATTCTGCCAGACCCTTACTTCAGGTCGC
TCGATAGGTTATGGTTTGACTCTGTGTATTCAAAGAAGCCATGGTATCTT
GGCAAAGACGTTCTTATAATTGATAAGGCATTGCTTTCTTTGAAACCAAC
TGATGAAGTTACCAGACTTCCACGAAGTTTAGCTGCACATCGCAATTATT
TTAAAGGTTTTCGGTACACGTGGATACTCAATCCTTGGTCAACTGCCTTT
TATTGATGTAATTTGGAATATACCGTTTGACTACATGCATGGAATATTTC
AAGGTGTAGCAAAATGGTTGCTTTAGAAACAAAAGAAACATCATTTTCTA
CTTATTGTAAATGGAATATTTATACTTCAAAAAGAAGAACAAATAAATGC
CGAAATTGGATGTTCTACTATGCCCCTGTGATTCTAAATGGAATTCTGCC
AGACCCTTACTTCAGGTCGCTCGATAGGTTATGGTTTGACTCTGTGTATT
CAAAGAAGCCATGGTATCTTGGCAAAGACGTTCTTATAATTGATAAGGCA
TTGCTTTCTTTGAAACCAACTGATGAAGTTACCAGACTTCCACGAAGTTT
AGCTGCACATCGCAATTATTTTAAAGGTTTTCGGTACACGTGGATACTCA
ATCCTTGGTCAACTGCCTTTTATTGATGTAATTTGGAATATACCGTTTGA
CTACATGCATGGAATATTTCAAGGTGTAGCAAAATGGTTGCTTTAGAAAC
AAAAGAAACATCATTTTCTACTTATTGTAAATGGAATATTTATACTTCAA
AAAGAAGAACAAATAAATGCCGAAATTGGATGTTCTACTATGCCCCTGTG
ATTCTAAATGGAATTCTGCCAGACCCTTACTTCAGGTCGCTCGATAGGTT
ATGGTTTGACTCTGTGTATTCAAAGAAGCCATGGTATCTTGGCAAAGACG
TTCTTATAATTGATAAGGCATTGCTTTCTTTGAAACCAACTGATGAAGTT
ACCAGACTTCCACGAAGTTTAGCTGCACATCGCAATTATTTTAAAGGTTT
TCGGTACACGTGGATACTCAATCCTTGGTCAACTGCCTTTTATTGATGTA
ATTTGGAATATACCGTTTGACTACATGCATGGAATATTTCAAGGTGTAGC
AAAATGGTTGCTTTAGAAACAAAAGAAACATCATTTTCTACTTATTGTAA
ATGGAATATTTATACTTCAAAAAGAAGAACAAATAAATGCCGAAATTGGA
TGTTCTACTATGCCCCTGTGATTCTAAATGGAATTCTGCCAGACCCTTAC
TTCAGGTCGCTCGATAGGTTATGGTTTGACTCTGTGTATTCAAAGAAGCC
ATGGTATCTTGGCAAAGACGTTCTTATAATTGATAAGGCATTGCTTTCTT
TGAAACCAACTGATGAAGTTACCAGACTTCCACGAAGTTTAGCTGCACAT
CGCAATTATTTTAAAGGTTTTCGGTACACGTGGATACTCAATCCTTGGTC
AACTGCCTTTTATTGATGTAATTTGGAATATACCGTTTGACTACATGCAT
GGAATATTTCAAGGTGTAGCAAAATGGTTGCTTTAGAAACAAAAGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023612XLOC_023612Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039192-proteinTCONS_00039192-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039192-exon-sc0002038-1575043694:22690..22814TCONS_00039192-exon-sc0002038-1575043694:22690..22814Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1575043694:22148..22228TCONS_00039192-exon-sc0002038-1575043694:22148..22228Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1575043694:21425..21603TCONS_00039192-exon-sc0002038-1575043694:21425..21603Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1575043694:21098..21204TCONS_00039192-exon-sc0002038-1575043694:21098..21204Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1575043694:20847..21007TCONS_00039192-exon-sc0002038-1575043694:20847..21007Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1575043694:20113..20188TCONS_00039192-exon-sc0002038-1575043694:20113..20188Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1575043694:19629..19677TCONS_00039192-exon-sc0002038-1575043694:19629..19677Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1510915933:22690..22814TCONS_00039192-exon-sc0002038-1510915933:22690..22814Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1510915933:22148..22228TCONS_00039192-exon-sc0002038-1510915933:22148..22228Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1510915933:21425..21603TCONS_00039192-exon-sc0002038-1510915933:21425..21603Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1510915933:21098..21204TCONS_00039192-exon-sc0002038-1510915933:21098..21204Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1510915933:20847..21007TCONS_00039192-exon-sc0002038-1510915933:20847..21007Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1510915933:20113..20188TCONS_00039192-exon-sc0002038-1510915933:20113..20188Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1510915933:19629..19677TCONS_00039192-exon-sc0002038-1510915933:19629..19677Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1491911889:22690..22814TCONS_00039192-exon-sc0002038-1491911889:22690..22814Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1491911889:22148..22228TCONS_00039192-exon-sc0002038-1491911889:22148..22228Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1491911889:21425..21603TCONS_00039192-exon-sc0002038-1491911889:21425..21603Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1491911889:21098..21204TCONS_00039192-exon-sc0002038-1491911889:21098..21204Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1491911889:20847..21007TCONS_00039192-exon-sc0002038-1491911889:20847..21007Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1491911889:20113..20188TCONS_00039192-exon-sc0002038-1491911889:20113..20188Clytia hemisphaericaexon
TCONS_00039192-exon-sc0002038-1491911889:19629..19677TCONS_00039192-exon-sc0002038-1491911889:19629..19677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:19629..22814 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0352985	0	0	0	0	0	0	0.0650818	0.06317	0.0207627	0.103669	0.258388	0.761207	0.22797	0.374454	0.167914	0.265122	0.589541	0.120569	0.088214	0.0357452	0.0974928	0.100415	0.149364	0	0	0	0.105763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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