TCONS_00039191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039191
Unique NameTCONS_00039191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039191 ID=TCONS_00039191|Name=TCONS_00039191|organism=Clytia hemisphaerica|type=transcript|length=764bp
TATAAATGTAGTGAACGTCGATATGAGGCTCCCAGACTTAATCTCAAGCA
TGAAAGAGTTGACTCCTGAATGGACATTTTACAACAAATTGATTGGGAAA
AGAGAATCCGTAAACCGACTTCAATGTTATGGGCCATTTACTCCTGCAAA
CCAAATCGATGAAATAAGGCACCTTGAGGAATTCGTCCGACCTGGAGACA
TTGTGCTGCAGTTTCCCAAGTTACAAACCCCGAAGTTTTTGTTGAAATCT
GAAAACTATACACGATCGTCGTCCAGAGATAACAAAGCTGTGCGTTTCAT
TTGCGATGACAAAAGTATCTATGgactaaataaatattttttaaagataA
ACGAAAGCCTTTTATTGGCCATTGTGGATTTACTGACGCAAACTGAGGAA
GCACCAAGTGGAAGGATAGGAAATGAAACGTTTGACGTGACTCATATTAA
ATCTTTTAGAAGGAATAACAATTTAATGGCAATCGACGTTAACGCTATTA
TGGAGAAAAAGATATGTCTTTCACAGAGGAATATCGTTTTTTTGGTTGAC
CTGGTAAACAGCAATGAAAGTGATTGAGGAAGAACAAAAACGTTTCAGCA
TAGAAAacataccttattacacgaatattactagtcattttattaacacg
aattgaaaaattttttattaacacaaattgaaaaatttcgtgttaataaa
aaccctccttaattaaaaccagccaccgtttccttgaaaaagcagaaaaa
ttcgtgttaatttc
Run BLAST on NCBI

protein sequence of TCONS_00039191-protein

>TCONS_00039191-protein ID=TCONS_00039191-protein|Name=TCONS_00039191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
INVVNVDMRLPDLISSMKELTPEWTFYNKLIGKRESVNRLQCYGPFTPAN
QIDEIRHLEEFVRPGDIVLQFPKLQTPKFLLKSENYTRSSSRDNKAVRFI
CDDKSIYGLNKYFLKINESLLLAIVDLLTQTEEAPSGRIGNETFDVTHIK
SFRRNNNLMAIDVNAIMEKKICLSQRNIVFLVDLVNSNESD
Run BLAST on NCBI

transcript from alignment at sc0002038:16628..18878-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039191 ID=TCONS_00039191|Name=TCONS_00039191|organism=Clytia hemisphaerica|type=transcript|length=2251bp|location=Sequence derived from alignment at sc0002038:16628..18878- (Clytia hemisphaerica)
TATAAATGTAGTGAACGTCGATATGAGGCTCCCAGACTTAATCTCAAGCA
TGAAAGAGTTGACTCCTGAATGGACATTTTACAACAAATTGATTGGGAAA
AGGTCAGATTTGAGAAAAAGATTTGTTATGACCACCTGGACCACCCCCTA
TCGAATTTTTAAGTGAAACTTGTTATGTTGATTATATATCTCCCCTGTGT
TTCTGATAACACTTTTGAAAAAAGGACCTCTAAGAAGTTCAATTGGTAAT
AAGTTGTCTATGTCTCAACATATCGAAAACAATACAGCTGATACAACCCA
TTGAAAAGATCACAAAATCTACATTGTATCTGACTTACAATCTTTTGAGA
AATAAGCTGAAGAGTCAACTAAATGAAAAAACCTAGATGTTTGAAATGGA
ACATATTTATGAGTCATCTCGTTTTAAATACATTCTTATCAATACTCATG
CTTAGAGAATCCGTAAACCGACTTCAATGTTATGGGCCATTTACTCCTGC
AAACCAAATCGATGAAATAAGGCACCTTGAGGAATTCGTCCGACCTGGGT
AAGAACCACCAATTACAAAATTGATTTAACCCTATCTATATCAAACATTT
GAATCTTGACATTTCTTTAGTTTTGTAACATAATCTAATAATTATTACCA
TCATTTGTATCATAGTTTTATTGGCTACAGCTATTTTATAGTACAATCTA
ACTAAACATTACCCTTTCTCGAATCAGAGACATTGTGCTGCAGTTNGACT
ACAGCTATTGTATAGTACAATCTAACTAAACATTACCCTTTCTCGAATTA
GAGACATTGTGCTGCAGTTTCCCAAGTTACAAACCCCGAAGTTTTTGTTG
AAATCTGAAAACTATACACGATCGTCGTCCAGAGATAACAAAGCTGTGCG
TTTCATTTGCGATGACAAAAGTATCTATGGACTAAATAAATATTTTTTAA
AGGTAAACAAGTCATTGATTTCTCCGTTTTCTCCCATCTACCAGGAGTTT
TGTCATAAAAAATTGAGTTTCCCTTTTATATCTAGGTGTGGGGGATGGAG
AAATGTTCAGGTCAAAAATTTCATAAAGTATACGAAAATCTATATCAAGC
ATGATACTTCCAACATTTGATTCAACCCCTTAGATCCCTAATAAGGTATC
CGATAGTAACCAGGTCTCTTTTTGGTCTTGGGTTATTATCTTTCTTTTTT
CTTTCCAGATAAACGAAAGCCTTTTATTGGCCATTGTGGATTTACTGACG
CAAACTGAGGAAGCACCAAGTGGAAGGATAGGAAATGAAACGTTTGACGT
GACTCATATTAAATCTTTTAGAAGGTAAAATATTCCATTTAAGCAAGGAT
AGCTAGTGTCTTTAAATGTTTCATTGAAGGTGGTGGGGTTAAGATCGAAC
CGCTTTAAAACTGTGAATTAGCTCTAGTTTAGACGGCCCACTTTTTGCCC
TGCCTATTCTAATTGCGAATTAAAGAGGGCATAAAGTGGGCTGTCTAAAG
TGATGCATAGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGCAAAGATTTTAACAACC
AACTTTGTGCCCTCTTTCTGCCTACTCTAACAATTAGAATAGGCAGGGCA
GAAAGTCGGCCGTCTAAACTAGAGCTTAGATGAACATTAGTTGATCCAAT
GGACAATCAAAATTACCCTCAAACAGAGCAAAATTACCCCCAAACAGAGC
AAGTTTACCCCCGGACAAGGCGGTTTCCTGGATTTTCCAAATATTTTGAA
TATGAAGGAATTCAATACGGGATGTAGCACATTTTTAACATTCTTGCAGG
AATAACAATTTAATGGCAATCGACGTTAACGCTATTATGGAGAAAAAGAT
ATGTCTTTCACAGAGGAATATCGTTTTTTTGGTTGACCTGGTAAACAGCA
ATGAAAGTGATTGAGGAAGAACAAAAACGTTTCAGCATAGAAAACATACC
TTATTACACGAATATTACTAGTCATTTTATTAACACGAATTGAAAAATTT
TTTATTAACACAAATTGAAAAATTTCGTGTTAATAAAAACCCTCCTTAAT
TAAAACCAGCCACCGTTTCCTTGAAAAAGCAGAAAAATTCGTGTTAATTT
C

Coding sequence (CDS) from alignment at sc0002038:16628..18878-

>TCONS_00039191 ID=TCONS_00039191|Name=TCONS_00039191|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0002038:16628..18878- (Clytia hemisphaerica)
GAATAACAATTTAATGGCAATCGACGTTAACGCTATTATGGAGAAAAAGA
TATGTCTTTCACAGAGGAATATCGTTTTTTTGGTTGACCTGGTAAACAGC
AATGAAAGTGATTGAATAAACGAAAGCCTTTTATTGGCCATTGTGGATTT
ACTGACGCAAACTGAGGAAGCACCAAGTGGAAGGATAGGAAATGAAACGT
TTGACGTGACTCATATTAAATCTTTTAGAAGAGACATTGTGCTGCAGTTT
CCCAAGTTACAAACCCCGAAGTTTTTGTTGAAATCTGAAAACTATACACG
ATCGTCGTCCAGAGATAACAAAGCTGTGCGTTTCATTTGCGATGACAAAA
GTATCTATGGACTAAATAAATATTTTTTAAAGAGAATCCGTAAACCGACT
TCAATGTTATGGGCCATTTACTCCTGCAAACCAAATCGATGAAATAAGGC
ACCTTGAGGAATTCGTCCGACCTGGATAAATGTAGTGAACGTCGATATGA
GGCTCCCAGACTTAATCTCAAGCATGAAAGAGTTGACTCCTGAATGGACA
TTTTACAACAAATTGATTGGGAAAAGGAATAACAATTTAATGGCAATCGA
CGTTAACGCTATTATGGAGAAAAAGATATGTCTTTCACAGAGGAATATCG
TTTTTTTGGTTGACCTGGTAAACAGCAATGAAAGTGATTGAATAAACGAA
AGCCTTTTATTGGCCATTGTGGATTTACTGACGCAAACTGAGGAAGCACC
AAGTGGAAGGATAGGAAATGAAACGTTTGACGTGACTCATATTAAATCTT
TTAGAAGAGACATTGTGCTGCAGTTTCCCAAGTTACAAACCCCGAAGTTT
TTGTTGAAATCTGAAAACTATACACGATCGTCGTCCAGAGATAACAAAGC
TGTGCGTTTCATTTGCGATGACAAAAGTATCTATGGACTAAATAAATATT
TTTTAAAGAGAATCCGTAAACCGACTTCAATGTTATGGGCCATTTACTCC
TGCAAACCAAATCGATGAAATAAGGCACCTTGAGGAATTCGTCCGACCTG
GATAAATGTAGTGAACGTCGATATGAGGCTCCCAGACTTAATCTCAAGCA
TGAAAGAGTTGACTCCTGAATGGACATTTTACAACAAATTGATTGGGAAA
AGGAATAACAATTTAATGGCAATCGACGTTAACGCTATTATGGAGAAAAA
GATATGTCTTTCACAGAGGAATATCGTTTTTTTGGTTGACCTGGTAAACA
GCAATGAAAGTGATTGAATAAACGAAAGCCTTTTATTGGCCATTGTGGAT
TTACTGACGCAAACTGAGGAAGCACCAAGTGGAAGGATAGGAAATGAAAC
GTTTGACGTGACTCATATTAAATCTTTTAGAAGAGACATTGTGCTGCAGT
TTCCCAAGTTACAAACCCCGAAGTTTTTGTTGAAATCTGAAAACTATACA
CGATCGTCGTCCAGAGATAACAAAGCTGTGCGTTTCATTTGCGATGACAA
AAGTATCTATGGACTAAATAAATATTTTTTAAAGAGAATCCGTAAACCGA
CTTCAATGTTATGGGCCATTTACTCCTGCAAACCAAATCGATGAAATAAG
GCACCTTGAGGAATTCGTCCGACCTGGATAAATGTAGTGAACGTCGATAT
GAGGCTCCCAGACTTAATCTCAAGCATGAAAGAGTTGACTCCTGAATGGA
CATTTTACAACAAATTGATTGGGAAAAGGAATAACAATTTAATGGCAATC
GACGTTAACGCTATTATGGAGAAAAAGATATGTCTTTCACAGAGGAATAT
CGTTTTTTTGGTTGACCTGGTAAACAGCAATGAAAGTGATTGAATAAACG
AAAGCCTTTTATTGGCCATTGTGGATTTACTGACGCAAACTGAGGAAGCA
CCAAGTGGAAGGATAGGAAATGAAACGTTTGACGTGACTCATATTAAATC
TTTTAGAAGAGACATTGTGCTGCAGTTTCCCAAGTTACAAACCCCGAAGT
TTTTGTTGAAATCTGAAAACTATACACGATCGTCGTCCAGAGATAACAAA
GCTGTGCGTTTCATTTGCGATGACAAAAGTATCTATGGACTAAATAAATA
TTTTTTAAAGAGAATCCGTAAACCGACTTCAATGTTATGGGCCATTTACT
CCTGCAAACCAAATCGATGAAATAAGGCACCTTGAGGAATTCGTCCGACC
TGGATAAATGTAGTGAACGTCGATATGAGGCTCCCAGACTTAATCTCAAG
CATGAAAGAGTTGACTCCTGAATGGACATTTTACAACAAATTGATTGGGA
AAAGGAATAACAATTTAATGGCAATCGACGTTAACGCTATTATGGAGAAA
AAGATATGTCTTTCACAGAGGAATATCGTTTTTTTGGTTGACCTGGTAAA
CAGCAATGAAAGTGATTGAATAAACGAAAGCCTTTTATTGGCCATTGTGG
ATTTACTGACGCAAACTGAGGAAGCACCAAGTGGAAGGATAGGAAATGAA
ACGTTTGACGTGACTCATATTAAATCTTTTAGAAGAGACATTGTGCTGCA
GTTTCCCAAGTTACAAACCCCGAAGTTTTTGTTGAAATCTGAAAACTATA
CACGATCGTCGTCCAGAGATAACAAAGCTGTGCGTTTCATTTGCGATGAC
AAAAGTATCTATGGACTAAATAAATATTTTTTAAAGAGAATCCGTAAACC
GACTTCAATGTTATGGGCCATTTACTCCTGCAAACCAAATCGATGAAATA
AGGCACCTTGAGGAATTCGTCCGACCTGGATAAATGTAGTGAACGTCGAT
ATGAGGCTCCCAGACTTAATCTCAAGCATGAAAGAGTTGACTCCTGAATG
GACATTTTACAACAAATTGATTGGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023611XLOC_023611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039191-exon-sc0002038-1575043694:18777..18878TCONS_00039191-exon-sc0002038-1575043694:18777..18878Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1575043694:18331..18423TCONS_00039191-exon-sc0002038-1575043694:18331..18423Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1575043694:17927..18077TCONS_00039191-exon-sc0002038-1575043694:17927..18077Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1575043694:17555..17670TCONS_00039191-exon-sc0002038-1575043694:17555..17670Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1575043694:16628..16929TCONS_00039191-exon-sc0002038-1575043694:16628..16929Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1510915933:18777..18878TCONS_00039191-exon-sc0002038-1510915933:18777..18878Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1510915933:18331..18423TCONS_00039191-exon-sc0002038-1510915933:18331..18423Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1510915933:17927..18077TCONS_00039191-exon-sc0002038-1510915933:17927..18077Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1510915933:17555..17670TCONS_00039191-exon-sc0002038-1510915933:17555..17670Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1510915933:16628..16929TCONS_00039191-exon-sc0002038-1510915933:16628..16929Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1491911889:18777..18878TCONS_00039191-exon-sc0002038-1491911889:18777..18878Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1491911889:18331..18423TCONS_00039191-exon-sc0002038-1491911889:18331..18423Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1491911889:17927..18077TCONS_00039191-exon-sc0002038-1491911889:17927..18077Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1491911889:17555..17670TCONS_00039191-exon-sc0002038-1491911889:17555..17670Clytia hemisphaericaexon
TCONS_00039191-exon-sc0002038-1491911889:16628..16929TCONS_00039191-exon-sc0002038-1491911889:16628..16929Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039191-proteinTCONS_00039191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:16628..18878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19375	0.063902	0.15572	0.0759091	0.295483	0	0.249702	0.156263	0.162201	0.203221	0.130122	0.561395	0.0868439	0.13321	1.74512	1.23235	0.577786	0.837845	0.679525	0.716459	0.563802	0.284712	0.52798	0.0673185	0.480426	0.368228	0	0.290947	0.2159	0.147074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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