TCONS_00039190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039190
Unique NameTCONS_00039190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039190 ID=TCONS_00039190|Name=TCONS_00039190|organism=Clytia hemisphaerica|type=transcript|length=781bp
CTTATAACGTGCCAGATTCTGAGGacgatgaagatgaaaattacTGGAGA
GCATCTGACACCGAAAGAACTCCTCCAAAAGAGACTCACTTCCAAATAAC
TGACAGTCGAGGCAAACGCTCTAACAAAGATGGACCGTCATCCTCAAAAA
ATAAGGAGCGCTATCCGCTATCTACAGCAGATTACCAAAGAAAGACTGTG
AAGCTCCTTTTAGATATAAAGAAATGTCTAAAAAAAAGTCTATCAACGGA
GTTCGCCTGCTCGGTGTGATACCCTAGAGCAATTGATCGAATTTGAGCGA
AGCCTGTCGAACCAGTCGGAATATGAGAAACTGGAAAGATTATAAGCATA
AATTCCAAGTGTTTGGTGGTCGAAGGGGCATTGACTGTTGTATATAATTC
CCAACGTGCGAGAGCCCAAAGTTTTACTTCTATTCTGCCACAAAATCAAC
CCAGATGGGACAAATGTAAGACGTATGGACATCAACAATTTAAAAAACGA
ACTTTCACTTATCGATGAAGAACTTAAAAACGATTTAGGATTTTGATCTG
TTTTAAACGTGTAAACTCTCTTTTTGTCTTGTGTTTTACTTTCttatttt
tagtttaatatttttaaacttgaaGATTCTAACACTTTCACGTCCGATAA
AAGTGGAAAAAATGCCATAAAGGCCTAAAGTTGGTTGAAATCCATACGTT
TACGAAGGTTGGAAATGAGAActtgaatttctcttttttcaaggaaagat
tttttgcgaaaaaatggcacaaaaaattttt
Run BLAST on NCBI

transcript from alignment at sc0002038:2773..4480+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039190 ID=TCONS_00039190|Name=TCONS_00039190|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at sc0002038:2773..4480+ (Clytia hemisphaerica)
CTTATAACGTGCCAGATTCTGAGGacgatgaagatgaaaattacTGGAGA
GGTAAAAgaatgctttgtttttgataCTTCATGATATTCGGGCCAAGGCT
TCTGCAGGACCGTGAAAAccaattgaaaattatttcatagGCACTATGTA
GGCACTTTTGGATGAAACATGGAAAATGGCACGTNAAAATTATTTCATAG
GCACTATGTAGGCACTTTTGGTTGAAACATGGAAAATGGCACGCTtttaa
ttttcccttttttatttCAGCATCTGACACCGAAAGAACTCCTCCAAAAG
AGACTCACTTCCAAATAACTGACAGTCGAGGTACTTATAGTAAAAGACTT
TCAAGGCTTATAAATGAACGGAAAATAAATTAATGAGTCCATGGTAGAAC
ATCTAGAGAATTTTAGTCTTATTCTATTCCGTATAGTACAGTAGCTCCAA
AGTTTTCCTAATCATAGTTATGTCCGGAAAAAATGTAATCGGTACTCAAA
CAAGCGTTAATGATTAATTATATCTTGTTTTTCTCAGATTCCAACAGTAA
CTTTTTGTTACCCCTCCTCTATGCTCGGAAATCTCTTGGCTTTAACGAAA
GCAGCAaggttaaaaataatttgtttataACCTTTAGTCCGTTATCAGAT
ATATATTAGGTTGCCACtgttaaaaagttttcataaGATTTATGTTTTTG
ACAGACCTTAAACGGAGAGGAGAAATATTGCTTTTGCTGGGGGTTCAATC
TCATCATCACAACTTttgacttctttatttttagGCAAACGCTCTAACAA
AGATGGACCGTCATCCTCAAAAAATAAGGAGCGCTATCCGCTATCTACAG
CAGGTACGATTTTTAGTAGATGCTGCTTtatgtgcagcagcttgtgcaaa
aaCATTTTATGTGTGATTATTTTGTCCCTTGAGTTTGGAAGATTAAAATT
TGAGGAGTGTTAGTTTTGCAGACTAAGCACCCATTAGAGAGTTGTGTGCT
TTTAACAGCGGATTATCTTTGATAGATGCCTTATACCACATAACTGCACA
AAACTGCACAAAACGATATTCAGTCATGTCAAATAATATAAGCTTTTCTC
GTTTTAGATTACCAAAGAAAGACTGTGAAGCTCCTTTTAGATATAAAGAA
ATGTCTAAAAAAAAGTCTATCAACGGAGTTCGCCTGCTCGGTGTGATACC
CTAGAGCAATTGATCGAATTTGAGCGAAGCCTGTCGAACCAGTCGGAATA
TGAGAAACTGGAAAGATTATAAGCATAAATTCCAAGTGTTTGGTGGTCGA
AGGGGCATTGACTGTTGTATATAATTCCCAACGTGCGAGAGCCCAAAGTT
TTACTTCTATTCTGCCACAAAATCAACCCAGATGGGACAAATGTAAGACG
TATGGACATCAACAATTTAAAAAACGAACTTTCACTTATCGATGAAGAAC
TTAAAAACGATTTAGGATTTTGATCTGTTTTAAACGTGTAAACTCTCTTT
TTGTCTTGTGTTTTACTTTCttatttttagtttaatatttttaaacttga
aGATTCTAACACTTTCACGTCCGATAAAAGTGGAAAAAATGCCATAAAGG
CCTAAAGTTGGTTGAAATCCATACGTTTACGAAGGTTGGAAATGAGAAct
tgaatttctcttttttcaaggaaagattttttgcgaaaaaatggcacaaa
aaattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023610XLOC_023610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039190-exon-sc0002038-1491911889:2773..2823TCONS_00039190-exon-sc0002038-1491911889:2773..2823Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1510915933:2773..2823TCONS_00039190-exon-sc0002038-1510915933:2773..2823Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1575043694:2773..2823TCONS_00039190-exon-sc0002038-1575043694:2773..2823Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1491911889:3043..3102TCONS_00039190-exon-sc0002038-1491911889:3043..3102Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1510915933:3043..3102TCONS_00039190-exon-sc0002038-1510915933:3043..3102Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1575043694:3043..3102TCONS_00039190-exon-sc0002038-1575043694:3043..3102Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1491911889:3557..3625TCONS_00039190-exon-sc0002038-1491911889:3557..3625Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1510915933:3557..3625TCONS_00039190-exon-sc0002038-1510915933:3557..3625Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1575043694:3557..3625TCONS_00039190-exon-sc0002038-1575043694:3557..3625Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1491911889:3880..4480TCONS_00039190-exon-sc0002038-1491911889:3880..4480Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1510915933:3880..4480TCONS_00039190-exon-sc0002038-1510915933:3880..4480Clytia hemisphaericaexon
TCONS_00039190-exon-sc0002038-1575043694:3880..4480TCONS_00039190-exon-sc0002038-1575043694:3880..4480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:2773..4480 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.18586	2.90821	2.00067	2.16494	1.15861	2.19526	0.816902	0.252282	0.872684	0.477978	0	0.0755914	0	0	0	0	0	0	0	0.0646543	0.199777	0.713186	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top