TCONS_00039189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039189
Unique NameTCONS_00039189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039189 ID=TCONS_00039189|Name=TCONS_00039189|organism=Clytia hemisphaerica|type=transcript|length=152bp
CTTATAACGTGCCAGATTCTGAGGacgatgaagatgaaaattacTGGAGA
GCATCTGACACCGAAAGAACTCCTCCAAAAGAGACTCACTTCCAAATAAC
TGACAGTCGAGATTCCAACAGTAACTTTTTGTTACCCCTCCTCTATGCTC
GG
Run BLAST on NCBI

transcript from alignment at sc0002038:2773..3350+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039189 ID=TCONS_00039189|Name=TCONS_00039189|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at sc0002038:2773..3350+ (Clytia hemisphaerica)
CTTATAACGTGCCAGATTCTGAGGacgatgaagatgaaaattacTGGAGA
GGTAAAAgaatgctttgtttttgataCTTCATGATATTCGGGCCAAGGCT
TCTGCAGGACCGTGAAAAccaattgaaaattatttcatagGCACTATGTA
GGCACTTTTGGATGAAACATGGAAAATGGCACGTNAAAATTATTTCATAG
GCACTATGTAGGCACTTTTGGTTGAAACATGGAAAATGGCACGCTtttaa
ttttcccttttttatttCAGCATCTGACACCGAAAGAACTCCTCCAAAAG
AGACTCACTTCCAAATAACTGACAGTCGAGGTACTTATAGTAAAAGACTT
TCAAGGCTTATAAATGAACGGAAAATAAATTAATGAGTCCATGGTAGAAC
ATCTAGAGAATTTTAGTCTTATTCTATTCCGTATAGTACAGTAGCTCCAA
AGTTTTCCTAATCATAGTTATGTCCGGAAAAAATGTAATCGGTACTCAAA
CAAGCGTTAATGATTAATTATATCTTGTTTTTCTCAGATTCCAACAGTAA
CTTTTTGTTACCCCTCCTCTATGCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023610XLOC_023610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039189-exon-sc0002038-1491911889:2773..2823TCONS_00039189-exon-sc0002038-1491911889:2773..2823Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1510915933:2773..2823TCONS_00039189-exon-sc0002038-1510915933:2773..2823Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1575043694:2773..2823TCONS_00039189-exon-sc0002038-1575043694:2773..2823Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1491911889:3043..3102TCONS_00039189-exon-sc0002038-1491911889:3043..3102Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1510915933:3043..3102TCONS_00039189-exon-sc0002038-1510915933:3043..3102Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1575043694:3043..3102TCONS_00039189-exon-sc0002038-1575043694:3043..3102Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1491911889:3310..3350TCONS_00039189-exon-sc0002038-1491911889:3310..3350Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1510915933:3310..3350TCONS_00039189-exon-sc0002038-1510915933:3310..3350Clytia hemisphaericaexon
TCONS_00039189-exon-sc0002038-1575043694:3310..3350TCONS_00039189-exon-sc0002038-1575043694:3310..3350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002038supercontigsc0002038:2773..3350 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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