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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039183 ID=TCONS_00039183|Name=TCONS_00039183|organism=Clytia hemisphaerica|type=transcript|length=1113bp
ACCGGCTTTTGCGTCGTCTTTTTGCTCTTCGTACTATAATTAGAAGAAAA
TTTACCTTTATCGTACAAAATTAGAGCAAAATCAGAAATTAGTGGATTAT
TTTAATTCCTTCAATGTGGccaaaataatttatcatacTAATTAGAGGAT
GGATTATATTAGAAGAATGACGGTACTCTATTTTGTTTAGTTTATTTAGC
AAAGAATGACAAGATAATGATATTTTGATATCAtgcacaaagattaaaaa
aaatatcaaaacttgaaaaaaaaacatgtgttACCTTCAAAGAGTTTCAG
GTGCCACTACATTCACTATTATTAGATGATTTTTGATAACCTTGCACCAA
TGGTTGTCTGCATCAGTTTTTAGAATTaggttccagaaaaaaaataaatg
actaaAACTTAAAAGACAAGGTTTAGAAAAGCTCCTTTCTTCTTTATCag
tgaataaaaaaataagtaggtttaattaaaaaaaaaattgaggcAGGCAA
CCTTTGGTTGGCAACGTACTGTAATATTATTTAACTTAAGATATTTCTTA
AAGTCAAAGACCACTCTTATATGTTTGACGTTTTTAAGTTTGACAAAATT
GTAGACAATGAGCTCCCAGGTCTCTGTAAACTATATTGTGATTCTTTCCA
GGAACGAAATATAAAATTTATGCTAATGGAATTTTTATATTAtcattttt
tggttttggtaAAATTAGGGTCAGTCAGGTCAACAGAACAACAAATTCAA
TTTGTATAATTATTGCTTTTTTTagacaaacaaataaaaatggaAGAAGC
TTTGGCCAAAGTAGGTTTGGCACATCTAGTACAAAAGTTCAAAGATGAAA
AGGTCGATGCTAATGTCATAACTTCGGCTTCTCATGAAGACCTTAAACAC
CTTGGTGTTAAAAAGCTTGGGGATCGAGTTAAATTGAAAGAACTCTGTAA
AAACACTACAATGTCCAGGATAAGACAAGAACGGCGAGATCTTTTTGCCC
CATATCCAAGTGCAACCACTAGAaacaaaaagcaacaaaaatataagaaa
gcaccaaagaaaaatttatcccgaatttccctcataaccatgagattact
agtacaaattcaG Run BLAST on NCBI protein sequence of TCONS_00039183-protein >TCONS_00039183-protein ID=TCONS_00039183-protein|Name=TCONS_00039183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MEEALAKVGLAHLVQKFKDEKVDANVITSASHEDLKHLGVKKLGDRVKLK
ELCKNTTMSRIRQERRDLFAPYPSATTRNKKQQKYKKAPKKNLSRISLIT
MRLLVQIQ Run BLAST on NCBI transcript from alignment at sc0002037:23785..24897 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039183 ID=TCONS_00039183|Name=TCONS_00039183|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at sc0002037:23785..24897 (Clytia hemisphaerica)
Ctgaatttgtactagtaatctcatggttatgagggaaattcgggataaat
ttttctttggtgctttcttatatttttgttgctttttgttTCTAGTGGTT
GCACTTGGATATGGGGCAAAAAGATCTCGCCGTTCTTGTCTTATCCTGGA
CATTGTAGTGTTTTTACAGAGTTCTTTCAATTTAACTCGATCCCCAAGCT
TTTTAACACCAAGGTGTTTAAGGTCTTCATGAGAAGCCGAAGTTATGACA
TTAGCATCGACCTTTTCATCTTTGAACTTTTGTACTAGATGTGCCAAACC
TACTTTGGCCAAAGCTTCTtccatttttatttgtttgtctAAAAAAAGCA
ATAATTATACAAATTGAATTTGTTGTTCTGTTGACCTGACTGACCCTAAT
TTtaccaaaaccaaaaaatgaTAATATAAAAATTCCATTAGCATAAATTT
TATATTTCGTTCCTGGAAAGAATCACAATATAGTTTACAGAGACCTGGGA
GCTCATTGTCTACAATTTTGTCAAACTTAAAAACGTCAAACATATAAGAG
TGGTCTTTGACTTTAAGAAATATCTTAAGTTAAATAATATTACAGTACGT
TGCCAACCAAAGGTTGCCTgcctcaattttttttttaattaaacctactt
atttttttattcactGATAAAGAAGAAAGGAGCTTTTCTAAACCTTGTCT
TTTAAGTTttagtcatttattttttttctggaacctAATTCTAAAAACTG
ATGCAGACAACCATTGGTGCAAGGTTATCAAAAATCATCTAATAATAGTG
AATGTAGTGGCACCTGAAACTCTTTGAAGGTaacacatgtttttttttca
agttttgatattttttttaatctttgtgcaTGATATCAAAATATCATTAT
CTTGTCATTCTTTGCTAAATAAACTAAACAAAATAGAGTACCGTCATTCT
TCTAATATAATCCATCCTCTAATTAgtatgataaattattttggCCACAT
TGAAGGAATTAAAATAATCCACTAATTTCTGATTTTGCTCTAATTTTGTA
CGATAAAGGTAAATTTTCTTCTAATTATAGTACGAAGAGCAAAAAGACGA
CGCAAAAGCCGGT Coding sequence (CDS) from alignment at sc0002037:23785..24897 >TCONS_00039183 ID=TCONS_00039183|Name=TCONS_00039183|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0002037:23785..24897 (Clytia hemisphaerica)
Ctgaatttgtactagtaatctcatggttatgagggaaattcgggataaat
ttttctttggtgctttcttatatttttgttgctttttgttTCTAGTGGTT
GCACTTGGATATGGGGCAAAAAGATCTCGCCGTTCTTGTCTTATCCTGGA
CATTGTAGTGTTTTTACAGAGTTCTTTCAATTTAACTCGATCCCCAAGCT
TTTTAACACCAAGGTGTTTAAGGTCTTCATGAGAAGCCGAAGTTATGACA
TTAGCATCGACCTTTTCATCTTTGAACTTTTGTACTAGATGTGCCAAACC
TACTTTGGCCAAAGCTTCTtccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039183-exon-sc0002037-1491911889:23785..24897 | TCONS_00039183-exon-sc0002037-1491911889:23785..24897 | Clytia hemisphaerica | exon |
| TCONS_00039183-exon-sc0002037-1510915933:23785..24897 | TCONS_00039183-exon-sc0002037-1510915933:23785..24897 | Clytia hemisphaerica | exon |
| TCONS_00039183-exon-sc0002037-1575043694:23785..24897 | TCONS_00039183-exon-sc0002037-1575043694:23785..24897 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002037 | supercontig | sc0002037:23785..24897 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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