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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039179 ID=TCONS_00039179|Name=TCONS_00039179|organism=Clytia hemisphaerica|type=transcript|length=1592bp
CGCAGACGGATGGAGACGGATCTTGGCCTCCAGGAATTATGGCAACGTTG
GATCTGACCTCAGAACTTCTCTGGCAAACATGCTTAAAATTCTTTGTCGC
ACAAAACTGGACCCAGCAACGGACCAAAGAAACATTGAAGCTTTTCTAGC
TTGTCGACTGATTCCCCTTGACAAAAATCCAGGGGTTCGCCCAATCGGAA
TCGGAGAGGTGATCAGGCGcatttttggaaaagttttgatatctACCATT
AAAGGGGACATTATGAAAGCAGCAGGCTCACTGCAAGTGTGTGCCGGCCA
ACAGGCAGGTAGTGAAGCTGCTGTACATGCTATGAATGAAATTTTTAGTG
AAGAAGACAACGACGCCATCCTTCTTGTAGACGCCTCTAACGCTTTTAAC
ACCCTGAAACGAGATGCCTTTCTGCACAACATTAAATTTCTCTGCCCAGC
AATCTCAACATACATACTAAACTGTTACAGTAAAAATTCTAGACTCTTTG
TCACTGGAGGCTCCGAACTGTCATCAAGTGAAGGAACCACCCAAGGCGAT
CCAATGGCTATGCCTGCATATGCCCTAGGGTTGGTACCTTTGCTAGATTT
ATTGAAAGAGGACCCACTATCGAGGAACGTCAAAGAAGCTGCATTTGCAG
ATGATCTCGCTGGTGGTGGTAAGCTTGCTAACCTATTGAAATGGTGGTCA
GAAATAAACAGACTCGGACCCTACCTTGGTTATCACCCTAAGGCTAGCAA
ATCTTGGCTGATTGTAAAAGAGAACAAGTACCTTGAAGCATTAAAACTTT
TTGAGGGAACCAACATCAATATAACAACAAATGGTCGGAAATACCTTGGT
GGCACTTTAGGAACTGAACATTTCAAATCTGACTACCTTAAGTCTAAAGT
ATCAGATTGGGTCAAGGAGATTATCGATCTATCAGATATTGCCAAGTCAC
AGCCTCAGTGTGCATACAGTGCTTTTGTAGGTGGGTTCATTCACAAATTC
ACCTATCATATTCGAGTCTTGGATGACATCTCCGATCTACTGAAGCCCCT
AGACGACGCAATAGACCAGCATCTTATACCAGCCTTGACAGAGGGACATC
ACTGCAACCAGATGGAAAGGAAGCTCCTCAGTCTACCGGTGAAGTTGGGG
GGTTTGGGTATACCCATCCTATCTGAGATCTCTGATATCGAGCATAGCAA
CTCAAGAAGAGTCAGTCACCAGCTCAAAACTGACATAGTCAACCAACAAA
AAGAGCTCAACTGCAACCCACTAAACGCAACCACCAAATACAAAGTAACA
CGCGAGAAAGAAGCAAGACAGAAAACACTGTTACAGGACATCAGATCCCA
GATGAACCAGGACGAGCTTAGAGCAAACGATCTAGCCCAAGCCCAAGGAG
CGTCAAACTGGCTGACAGCATTACCCCTCAAAAATGAGAACTTTGTATTA
TCGAAGAGAGAGTTTTTTGACGCAATCATAGTACGCTACAGATGGCAATT
GAAACACTTGCCTACTCACTGTGCATGTGGTAAAGTTTACACTGTCGAGC
ATGTCTTATCCTGTGCCAAAGGGGGTTTTGTCTACCAGAGGC Run BLAST on NCBI protein sequence of TCONS_00039179-protein >TCONS_00039179-protein ID=TCONS_00039179-protein|Name=TCONS_00039179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp
ADGWRRILASRNYGNVGSDLRTSLANMLKILCRTKLDPATDQRNIEAFLA
CRLIPLDKNPGVRPIGIGEVIRRIFGKVLISTIKGDIMKAAGSLQVCAGQ
QAGSEAAVHAMNEIFSEEDNDAILLVDASNAFNTLKRDAFLHNIKFLCPA
ISTYILNCYSKNSRLFVTGGSELSSSEGTTQGDPMAMPAYALGLVPLLDL
LKEDPLSRNVKEAAFADDLAGGGKLANLLKWWSEINRLGPYLGYHPKASK
SWLIVKENKYLEALKLFEGTNINITTNGRKYLGGTLGTEHFKSDYLKSKV
SDWVKEIIDLSDIAKSQPQCAYSAFVGGFIHKFTYHIRVLDDISDLLKPL
DDAIDQHLIPALTEGHHCNQMERKLLSLPVKLGGLGIPILSEISDIEHSN
SRRVSHQLKTDIVNQQKELNCNPLNATTKYKVTREKEARQKTLLQDIRSQ
MNQDELRANDLAQAQGASNWLTALPLKNENFVLSKREFFDAIIVRYRWQL
KHLPTHCACGKVYTVEHVLSCAKGGFVYQR Run BLAST on NCBI transcript from alignment at sc0002036:3207..4798 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039179 ID=TCONS_00039179|Name=TCONS_00039179|organism=Clytia hemisphaerica|type=transcript|length=1592bp|location=Sequence derived from alignment at sc0002036:3207..4798 (Clytia hemisphaerica)
GCCTCTGGTAGACAAAACCCCCTTTGGCACAGGATAAGACATGCTCGACA
GTGTAAACTTTACCACATGCACAGTGAGTAGGCAAGTGTTTCAATTGCCA
TCTGTAGCGTACTATGATTGCGTCAAAAAACTCTCTCTTCGATAATACAA
AGTTCTCATTTTTGAGGGGTAATGCTGTCAGCCAGTTTGACGCTCCTTGG
GCTTGGGCTAGATCGTTTGCTCTAAGCTCGTCCTGGTTCATCTGGGATCT
GATGTCCTGTAACAGTGTTTTCTGTCTTGCTTCTTTCTCGCGTGTTACTT
TGTATTTGGTGGTTGCGTTTAGTGGGTTGCAGTTGAGCTCTTTTTGTTGG
TTGACTATGTCAGTTTTGAGCTGGTGACTGACTCTTCTTGAGTTGCTATG
CTCGATATCAGAGATCTCAGATAGGATGGGTATACCCAAACCCCCCAACT
TCACCGGTAGACTGAGGAGCTTCCTTTCCATCTGGTTGCAGTGATGTCCC
TCTGTCAAGGCTGGTATAAGATGCTGGTCTATTGCGTCGTCTAGGGGCTT
CAGTAGATCGGAGATGTCATCCAAGACTCGAATATGATAGGTGAATTTGT
GAATGAACCCACCTACAAAAGCACTGTATGCACACTGAGGCTGTGACTTG
GCAATATCTGATAGATCGATAATCTCCTTGACCCAATCTGATACTTTAGA
CTTAAGGTAGTCAGATTTGAAATGTTCAGTTCCTAAAGTGCCACCAAGGT
ATTTCCGACCATTTGTTGTTATATTGATGTTGGTTCCCTCAAAAAGTTTT
AATGCTTCAAGGTACTTGTTCTCTTTTACAATCAGCCAAGATTTGCTAGC
CTTAGGGTGATAACCAAGGTAGGGTCCGAGTCTGTTTATTTCTGACCACC
ATTTCAATAGGTTAGCAAGCTTACCACCACCAGCGAGATCATCTGCAAAT
GCAGCTTCTTTGACGTTCCTCGATAGTGGGTCCTCTTTCAATAAATCTAG
CAAAGGTACCAACCCTAGGGCATATGCAGGCATAGCCATTGGATCGCCTT
GGGTGGTTCCTTCACTTGATGACAGTTCGGAGCCTCCAGTGACAAAGAGT
CTAGAATTTTTACTGTAACAGTTTAGTATGTATGTTGAGATTGCTGGGCA
GAGAAATTTAATGTTGTGCAGAAAGGCATCTCGTTTCAGGGTGTTAAAAG
CGTTAGAGGCGTCTACAAGAAGGATGGCGTCGTTGTCTTCTTCACTAAAA
ATTTCATTCATAGCATGTACAGCAGCTTCACTACCTGCCTGTTGGCCGGC
ACACACTTGCAGTGAGCCTGCTGCTTTCATAATGTCCCCTTTAATGGTag
atatcaaaacttttccaaaaatgCGCCTGATCACCTCTCCGATTCCGATT
GGGCGAACCCCTGGATTTTTGTCAAGGGGAATCAGTCGACAAGCTAGAAA
AGCTTCAATGTTTCTTTGGTCCGTTGCTGGGTCCAGTTTTGTGCGACAAA
GAATTTTAAGCATGTTTGCCAGAGAAGTTCTGAGGTCAGATCCAACGTTG
CCATAATTCCTGGAGGCCAAGATCCGTCTCCATCCGTCTGCG Coding sequence (CDS) from alignment at sc0002036:3207..4798 >TCONS_00039179 ID=TCONS_00039179|Name=TCONS_00039179|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0002036:3207..4798 (Clytia hemisphaerica)
CCTCTGGTAGACAAAACCCCCTTTGGCACAGGATAAGACATGCTCGACAG
TGTAAACTTTACCACATGCACAGTGAGTAGGCAAGTGTTTCAATTGCCAT
CTGTAGCGTACTATGATTGCGTCAAAAAACTCTCTCTTCGATAATACAAA
GTTCTCATTTTTGAGGGGTAATGCTGTCAGCCAGTTTGACGCTCCTTGGG
CTTGGGCTAGATCGTTTGCTCTAAGCTCGTCCTGGTTCATCTGGGATCTG
ATGTCCTGTAACAGTGTTTTCTGTCTTGCTTCTTTCTCGCGTGTTACTTT
GTATTTGGTGGTTGCGTTTAGTGGGTTGCAGTTGAGCTCTTTTTGTTGGT
TGACTATGTCAGTTTTGAGCTGGTGACTGACTCTTCTTGAGTTGCTATGC
TCGATATCAGAGATCTCAGATAGGATGGGTATACCCAAACCCCCCAACTT
CACCGGTAGACTGAGGAGCTTCCTTTCCATCTGGTTGCAGTGATGTCCCT
CTGTCAAGGCTGGTATAAGATGCTGGTCTATTGCGTCGTCTAGGGGCTTC
AGTAGATCGGAGATGTCATCCAAGACTCGAATATGATAGGTGAATTTGTG
AATGAACCCACCTACAAAAGCACTGTATGCACACTGAGGCTGTGACTTGG
CAATATCTGATAGATCGATAATCTCCTTGACCCAATCTGATACTTTAGAC
TTAAGGTAGTCAGATTTGAAATGTTCAGTTCCTAAAGTGCCACCAAGGTA
TTTCCGACCATTTGTTGTTATATTGATGTTGGTTCCCTCAAAAAGTTTTA
ATGCTTCAAGGTACTTGTTCTCTTTTACAATCAGCCAAGATTTGCTAGCC
TTAGGGTGATAACCAAGGTAGGGTCCGAGTCTGTTTATTTCTGACCACCA
TTTCAATAGGTTAGCAAGCTTACCACCACCAGCGAGATCATCTGCAAATG
CAGCTTCTTTGACGTTCCTCGATAGTGGGTCCTCTTTCAATAAATCTAGC
AAAGGTACCAACCCTAGGGCATATGCAGGCATAGCCATTGGATCGCCTTG
GGTGGTTCCTTCACTTGATGACAGTTCGGAGCCTCCAGTGACAAAGAGTC
TAGAATTTTTACTGTAACAGTTTAGTATGTATGTTGAGATTGCTGGGCAG
AGAAATTTAATGTTGTGCAGAAAGGCATCTCGTTTCAGGGTGTTAAAAGC
GTTAGAGGCGTCTACAAGAAGGATGGCGTCGTTGTCTTCTTCACTAAAAA
TTTCATTCATAGCATGTACAGCAGCTTCACTACCTGCCTGTTGGCCGGCA
CACACTTGCAGTGAGCCTGCTGCTTTCATAATGTCCCCTTTAATGGTaga
tatcaaaacttttccaaaaatgCGCCTGATCACCTCTCCGATTCCGATTG
GGCGAACCCCTGGATTTTTGTCAAGGGGAATCAGTCGACAAGCTAGAAAA
GCTTCAATGTTTCTTTGGTCCGTTGCTGGGTCCAGTTTTGTGCGACAAAG
AATTTTAAGCATGTTTGCCAGAGAAGTTCTGAGGTCAGATCCAACGTTGC
CATAATTCCTGGAGGCCAAGATCCGTCTCCATCCGTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039179-exon-sc0002036-1491911889:3207..4798 | TCONS_00039179-exon-sc0002036-1491911889:3207..4798 | Clytia hemisphaerica | exon |
| TCONS_00039179-exon-sc0002036-1510915933:3207..4798 | TCONS_00039179-exon-sc0002036-1510915933:3207..4798 | Clytia hemisphaerica | exon |
| TCONS_00039179-exon-sc0002036-1575043694:3207..4798 | TCONS_00039179-exon-sc0002036-1575043694:3207..4798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002036 | supercontig | sc0002036:3207..4798 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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