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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039166 ID=TCONS_00039166|Name=TCONS_00039166|organism=Clytia hemisphaerica|type=transcript|length=1670bp
GTTTAAGTGACTGACATTTTTTTAGCAAGGACTCTAAGCTTTTTTATAAA
GGTTTTGCATCACGTCTCTATCAAGAGATTTTTTAgttcgtgattttttt
tgtgtgcTCAATTGTTCTAGAATTTCGAGCTTCGATCCAACGATTTAAAG
ATTTGAAATTCATTGCTGAAATCAGCCTAGGATTCTGGGAATAATTCTTA
TTCATACTAGACATTAGTACACACATTTAAAGCGAATCGACTCGAAACGT
TCATTAATTAAGGTTATTTGAAGTTTTAAAGCTTTAAAGATTTCCAATTT
TAGATTCTACACTTCATTTTCATCCATCTTAttcttaatcaatttttttt
gttgaagtAGAAATCAAAAAAGGTGACAAAAGATGAAGTGGTTTTGGTGT
ATGGCTTTAGTCGTTGGTCTACTGGTTGCCCATAGTAACGGAGAACATCC
AGGATCTGTTGAAGAGGAGTGTAAAAACGAGGAAGGAGCATGCCGTGAAA
ATGGAGGTGATACAGCAGAATGTAAAATCGCTTATGATATTTGCATTACA
GAGATGGAAAACCCACCTTATTTCGCCAACCCTAATCCTGtcgaataaaa
aatcaaccaaaattttcTAGTTCGGTATTTCTATTTATTTTGCACTGCCT
TAtattgtttttgtaaatttctaatttttttcttgcagTACGAGTTGttg
taaatatatttcaaagaGCAAACAAAAATTGTGATTTATTCTTTATTCTT
CACTTTCTTTCAGCTTTGACAATTAGCAAaacatttatcaaaaatacaaa
aatagacATTGAAATAAAACTATAAATTACTACACAATTTTGAGTCCAAA
CAGTAAGATCCGACAGTTAGATTATTCAATATGGACAAAACTgatcaaaa
aattacaaaatctacataaaatttatgaaataaattgaataaaaagcttT
TTAGGTAATTTGATTGCCAAGTTTTTATGAAGTgtgaaaattttggtttt
aaacaaaaatatccTTGATATAAAATTGTCAAAACCAATTAAGTGCTACA
GCTGAAAAATTAAGTACTGTAAAGCATTTTTGCATTATTTGACTCGCAGA
AACAGGTATTTCAACACTTGCATGAAGGTAgaattaattcattttttctt
aaccttaaCCAAAGctaaaaacatctttttttgcCAATGAGTCACCTTCT
GGAAACTTGTGACATTCATAAAAATAGAGAGAAATAAAAACTATGAGCTA
CCGTAAGtatggtctaatgtcgacatccctcttctaacttcgacatcctt
ctttagagataagaataatagtaaggtcggaatcactgatagactccTTA
ACCGATTGTCAAGcaaagaaaatcagtttcaatcagcgattccgaccttc
ccattatctatctctaaagaaaagtgaaaattagaagagggatgtcgaca
ttagatcaACTTACGGCATATCGTATACGAATCTGTAGTTCTCGTCTCAC
GCAGTctcatacacccctgtctcagtgacccggtgccttttaaaatttca
ccggggataaaaaattttctttggaaagccagtggggatttttcaaagac
agaaaATACCAGTGGGGACACAgaattagaataaaaatttcagtggggat
ttcgaaattttctttttttc Run BLAST on NCBI transcript from alignment at sc0002030:10107..12114+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039166 ID=TCONS_00039166|Name=TCONS_00039166|organism=Clytia hemisphaerica|type=transcript|length=2008bp|location=Sequence derived from alignment at sc0002030:10107..12114+ (Clytia hemisphaerica)
GTTTAAGTGACTGACATTTTTTTAGCAAGGACTCTAAGCTTTTTTATAAA
GGTTTTGCATCACGTCTCTATCAAGAGATTTTTTAgttcgtgattttttt
tgtgtgcTCAATTGTTCTAGAATTTCGAGCTTCGATCCAACGATTTAAAG
ATTTGAAATTCATTGCTGAAATCAGCCTAGGATTCTGGGAATAATTCTTA
TTCATACTAGACATTAGTACACACATTTAAAGCGAATCGACTCGAAACGT
TCATTAATTAAGGTTATTTGAAGTTTTAAAGCTTTAAAGATTTCCAATTT
TAGATTCTACACTTCATTTTCATCCATCTTAttcttaatcaatttttttt
gttgaagtAGAAATCAAAAAAGGTGACAAAAGATGAAGTGGTTTTGGTGT
ATGGCTTTAGTCGTTGGTCTACTGGTTGCCCATAGTAACGGAGAACATCC
AGGATCTGTTGAAGAGGTACGTAAAATTCTTAATTAAGGAATATTCCTCT
GTTCTTAAgtttatcaaattttacaataagaTTGTTACAGAGCAAAAGAG
TTTCGAAAGTTTCTTAATTATCTATCCCAAAAGTTCTGTATCTTCACACA
TTAGAGCCCTTTTCATATCATTGTCCCTTTTTCTCCTGATAACCCTAAAA
TGCActttcaaaaatctgaaaaaagataAGTTAAATCACTCCAGTGCCGC
TCATCTGAGTCCCCCAAAATCGCTCAACTTTAATTGAAAATCATTAACTA
TCTACATACTGAAAAACATTATAATAATTGTTGTCTTTTTGAATTATTAC
ATAGGAGTGTAAAAACGAGGAAGGAGCATGCCGTGAAAATGGAGGTGATA
CAGCAGAATGTAAAATCGCTTATGATATTTGCATTACAGAGATGGAAAAC
CCACCTTATTTCGCCAACCCTAATCCTGtcgaataaaaaatcaaccaaaa
ttttcTAGTTCGGTATTTCTATTTATTTTGCACTGCCTTAtattgttttt
gtaaatttctaatttttttcttgcagTACGAGTTGttgtaaatatatttc
aaagaGCAAACAAAAATTGTGATTTATTCTTTATTCTTCACTTTCTTTCA
GCTTTGACAATTAGCAAaacatttatcaaaaatacaaaaatagacATTGA
AATAAAACTATAAATTACTACACAATTTTGAGTCCAAACAGTAAGATCCG
ACAGTTAGATTATTCAATATGGACAAAACTgatcaaaaaattacaaaatc
tacataaaatttatgaaataaattgaataaaaagcttTTTAGGTAATTTG
ATTGCCAAGTTTTTATGAAGTgtgaaaattttggttttaaacaaaaatat
ccTTGATATAAAATTGTCAAAACCAATTAAGTGCTACAGCTGAAAAATTA
AGTACTGTAAAGCATTTTTGCATTATTTGACTCGCAGAAACAGGTATTTC
AACACTTGCATGAAGGTAgaattaattcattttttcttaaccttaaCCAA
AGctaaaaacatctttttttgcCAATGAGTCACCTTCTGGAAACTTGTGA
CATTCATAAAAATAGAGAGAAATAAAAACTATGAGCTACCGTAAGtatgg
tctaatgtcgacatccctcttctaacttcgacatccttctttagagataa
gaataatagtaaggtcggaatcactgatagactccTTAACCGATTGTCAA
Gcaaagaaaatcagtttcaatcagcgattccgaccttcccattatctatc
tctaaagaaaagtgaaaattagaagagggatgtcgacattagatcaACTT
ACGGCATATCGTATACGAATCTGTAGTTCTCGTCTCACGCAGTctcatac
acccctgtctcagtgacccggtgccttttaaaatttcaccggggataaaa
aattttctttggaaagccagtggggatttttcaaagacagaaaATACCAG
TGGGGACACAgaattagaataaaaatttcagtggggatttcgaaattttc
tttttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039166-exon-sc0002030-1491911889:10107..10572 | TCONS_00039166-exon-sc0002030-1491911889:10107..10572 | Clytia hemisphaerica | exon |
| TCONS_00039166-exon-sc0002030-1510915933:10107..10572 | TCONS_00039166-exon-sc0002030-1510915933:10107..10572 | Clytia hemisphaerica | exon |
| TCONS_00039166-exon-sc0002030-1575043694:10107..10572 | TCONS_00039166-exon-sc0002030-1575043694:10107..10572 | Clytia hemisphaerica | exon |
| TCONS_00039166-exon-sc0002030-1491911889:10911..12114 | TCONS_00039166-exon-sc0002030-1491911889:10911..12114 | Clytia hemisphaerica | exon |
| TCONS_00039166-exon-sc0002030-1510915933:10911..12114 | TCONS_00039166-exon-sc0002030-1510915933:10911..12114 | Clytia hemisphaerica | exon |
| TCONS_00039166-exon-sc0002030-1575043694:10911..12114 | TCONS_00039166-exon-sc0002030-1575043694:10911..12114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002030 | supercontig | sc0002030:10107..12114 + |
Blast
The following BLAST results are available for this feature:
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