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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039161 ID=TCONS_00039161|Name=TCONS_00039161|organism=Clytia hemisphaerica|type=transcript|length=796bp
CACAGTTGTAAGTTTTTTCTTTGGCGATATCATTGACCGATCAAAAATTT
TCTTGGCTCCCTTTTTTGCTAGTCCTTTTCTGAGAGATGGATCTCCTTGT
TCAGTTACCTTCTCTCCTTCTTGGGCCTTTTTCCATTTATATTGCTGCAG
CCACACCTTAACAAATGCATTAGCTCTAACATTTATCCACTTTGAAATTA
ATTTGAGGAAAAGCTTTGACCTGACATTTTCATCCAAACTAATAGTGAGG
GATTTCCACTCATTCAACAAAGTTGTGCATGATAAAAATTTGGTCTTGAG
GACTTCCTTGATATTTTCCCCAGAGTACGTAGCAAACAAATTCAGATTCA
AAATAGTCCGTGCTAGTTTTTCAATCCTAACAATAATCTGATAAAATTGG
CTGTTCACTTTGAATAAGCCGCTTCTATCCACCTGCTCAACCCAAGCTCT
AACGTACTCGTTGATTCCCAAGTCTTTGTATGAGTTACTGTCTTTGGTAC
CCCAACTTTCGAGTAAAGTTACCAGTGGATTGGGTTTTAAAACAGAGGTC
CGCATGCCTTGTTTCAGCGAAAAAAACAAGATACTCAGCCACGTAATATA
AGGTTTGATCCTCATCCTTTGATATTTGTAGCTTTTCCATGTCCAATAAC
TCTATCTAAGCTTGAGACCCATAATGTGAGAGAATCTGGGTTAAGAAGGA
ATCTGCAACAAaatcggttagtgtaaaacgcaggtcacaggtcacaggtc
acaggtcagtgatgacaggttgactctaatcaatgtcattgcagag Run BLAST on NCBI protein sequence of TCONS_00039161-protein >TCONS_00039161-protein ID=TCONS_00039161-protein|Name=TCONS_00039161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MRIKPYITWLSILFFSLKQGMRTSVLKPNPLVTLLESWGTKDSNSYKDLG
INEYVRAWVEQVDRSGLFKVNSQFYQIIVRIEKLARTILNLNLFATYSGE
NIKEVLKTKFLSCTTLLNEWKSLTISLDENVRSKLFLKLISKWINVRANA
FVKVWLQQYKWKKAQEGEKVTEQGDPSLRKGLAKKGAKKIFDRSMISPKK
KLTTV Run BLAST on NCBI transcript from alignment at sc0002029:5..800 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039161 ID=TCONS_00039161|Name=TCONS_00039161|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at sc0002029:5..800 (Clytia hemisphaerica)
ctctgcaatgacattgattagagtcaacctgtcatcactgacctgtgacc
tgtgacctgtgacctgcgttttacactaaccgattTTGTTGCAGATTCCT
TCTTAACCCAGATTCTCTCACATTATGGGTCTCAAGCTTAGATAGAGTTA
TTGGACATGGAAAAGCTACAAATATCAAAGGATGAGGATCAAACCTTATA
TTACGTGGCTGAGTATCTTGTTTTTTTCGCTGAAACAAGGCATGCGGACC
TCTGTTTTAAAACCCAATCCACTGGTAACTTTACTCGAAAGTTGGGGTAC
CAAAGACAGTAACTCATACAAAGACTTGGGAATCAACGAGTACGTTAGAG
CTTGGGTTGAGCAGGTGGATAGAAGCGGCTTATTCAAAGTGAACAGCCAA
TTTTATCAGATTATTGTTAGGATTGAAAAACTAGCACGGACTATTTTGAA
TCTGAATTTGTTTGCTACGTACTCTGGGGAAAATATCAAGGAAGTCCTCA
AGACCAAATTTTTATCATGCACAACTTTGTTGAATGAGTGGAAATCCCTC
ACTATTAGTTTGGATGAAAATGTCAGGTCAAAGCTTTTCCTCAAATTAAT
TTCAAAGTGGATAAATGTTAGAGCTAATGCATTTGTTAAGGTGTGGCTGC
AGCAATATAAATGGAAAAAGGCCCAAGAAGGAGAGAAGGTAACTGAACAA
GGAGATCCATCTCTCAGAAAAGGACTAGCAAAAAAGGGAGCCAAGAAAAT
TTTTGATCGGTCAATGATATCGCCAAAGAAAAAACTTACAACTGTG Coding sequence (CDS) from alignment at sc0002029:5..800 >TCONS_00039161 ID=TCONS_00039161|Name=TCONS_00039161|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0002029:5..800 (Clytia hemisphaerica)
ATGAGGATCAAACCTTATATTACGTGGCTGAGTATCTTGTTTTTTTCGCT
GAAACAAGGCATGCGGACCTCTGTTTTAAAACCCAATCCACTGGTAACTT
TACTCGAAAGTTGGGGTACCAAAGACAGTAACTCATACAAAGACTTGGGA
ATCAACGAGTACGTTAGAGCTTGGGTTGAGCAGGTGGATAGAAGCGGCTT
ATTCAAAGTGAACAGCCAATTTTATCAGATTATTGTTAGGATTGAAAAAC
TAGCACGGACTATTTTGAATCTGAATTTGTTTGCTACGTACTCTGGGGAA
AATATCAAGGAAGTCCTCAAGACCAAATTTTTATCATGCACAACTTTGTT
GAATGAGTGGAAATCCCTCACTATTAGTTTGGATGAAAATGTCAGGTCAA
AGCTTTTCCTCAAATTAATTTCAAAGTGGATAAATGTTAGAGCTAATGCA
TTTGTTAAGGTGTGGCTGCAGCAATATAAATGGAAAAAGGCCCAAGAAGG
AGAGAAGGTAACTGAACAAGGAGATCCATCTCTCAGAAAAGGACTAGCAA
AAAAGGGAGCCAAGAAAATTTTTGATCGGTCAATGATATCGCCAAAGAAA
AAACTTACAACTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039161-exon-sc0002029-1491911889:5..800 | TCONS_00039161-exon-sc0002029-1491911889:5..800 | Clytia hemisphaerica | exon |
| TCONS_00039161-exon-sc0002029-1510915933:5..800 | TCONS_00039161-exon-sc0002029-1510915933:5..800 | Clytia hemisphaerica | exon |
| TCONS_00039161-exon-sc0002029-1575043694:5..800 | TCONS_00039161-exon-sc0002029-1575043694:5..800 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002029 | supercontig | sc0002029:5..800 . |
Blast
The following BLAST results are available for this feature:
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